RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 PDK1Q15118 436 aa19.04■□□□□ 0.64
COL18A1-204ENST00000400337 SLC13A5Q86YT5 568 aaPredicted RBP19.04■□□□□ 0.64
COL18A1-204ENST00000400337 SCFD1Q8WVM8 642 aa19.04■□□□□ 0.64
COL18A1-204ENST00000400337 MTMR12Q9C0I1 747 aa19.04■□□□□ 0.64
COL18A1-204ENST00000400337 IL17RBQ9NRM6 502 aa19.04■□□□□ 0.64
COL18A1-204ENST00000400337 MARCOQ9UEW3 520 aaPredicted RBP19.04■□□□□ 0.64
COL18A1-204ENST00000400337 EIF3HO15372 352 aaKnown RBP eCLIP19.04■□□□□ 0.645e-8■□□□□ 10.3
COL18A1-204ENST00000400337 OR1G1P47890 313 aa19.04■□□□□ 0.64
COL18A1-204ENST00000400337 PCSK7Q16549 785 aa19.04■□□□□ 0.64
COL18A1-204ENST00000400337 AMHR2Q16671 573 aa19.04■□□□□ 0.64
COL18A1-204ENST00000400337 DEFB132Q7Z7B7 95 aa19.04■□□□□ 0.64
COL18A1-204ENST00000400337 FOXP3Q9BZS1 431 aa19.04■□□□□ 0.64
COL18A1-204ENST00000400337 DPP3Q9NY33 737 aa19.04■□□□□ 0.64
COL18A1-204ENST00000400337 TMCC1O94876 653 aa19.04■□□□□ 0.64
COL18A1-204ENST00000400337 SUPT20HL2P0C7V6 817 aa19.04■□□□□ 0.64
COL18A1-204ENST00000400337 VCAM1P19320 739 aa19.04■□□□□ 0.64
COL18A1-204ENST00000400337 TAF6P49848 677 aa19.04■□□□□ 0.64
COL18A1-204ENST00000400337 ZSWIM1Q9BR11 485 aa19.04■□□□□ 0.64
COL18A1-204ENST00000400337 EML4Q9HC35 981 aaKnown RBP19.04■□□□□ 0.64
COL18A1-204ENST00000400337 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.04■□□□□ 0.641e-6■■■□□ 16.2
COL18A1-204ENST00000400337 PSMD3O43242 534 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 NCAM1P13591 858 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 MUTP22033 750 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 MDH1BQ5I0G3 518 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 AGBL2Q5U5Z8 902 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 XPO6Q96QU8 1125 aaKnown RBP19.03■□□□□ 0.64
COL18A1-204ENST00000400337 CENPKQ9BS16 269 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 TAL1P17542 331 aaPredicted RBP19.03■□□□□ 0.64
COL18A1-204ENST00000400337 MGAT5BQ3V5L5 792 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 IL31Q6EBC2 164 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 PARP9Q8IXQ6 854 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 SGSM3Q96HU1 749 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 SPATA17Q96L03 361 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 PACSIN1Q9BY11 444 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 TNS2Q63HR2 1409 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 NAMPTP43490 491 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 CPT1AP50416 773 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 STX3Q13277 289 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 CENPPQ6IPU0 288 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 POP1Q99575 1024 aaKnown RBP19.03■□□□□ 0.64
COL18A1-204ENST00000400337 NDE1Q9NXR1 346 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 CAPN6Q9Y6Q1 641 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 SLIT1O75093 1534 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 TLR2O60603 784 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 CYBBP04839 570 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 PDHA1P08559 390 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 SERPINB9P50453 376 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 SLC29A2Q14542 456 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 UGP2Q16851 508 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 TEDDM1Q5T9Z0 273 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 THEMIS2Q5TEJ8 643 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 FAM117BQ6P1L5 589 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 SH3KBP1Q96B97 665 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 ARHGEF38Q9NXL2 777 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 ENO1P06733 434 aaKnown RBP19.03■□□□□ 0.64
COL18A1-204ENST00000400337 ING2Q9H160 280 aa19.03■□□□□ 0.64
COL18A1-204ENST00000400337 TMEM120BA0PK00 339 aa19.02■□□□□ 0.64
COL18A1-204ENST00000400337 MEFVO15553 781 aaPredicted RBP19.02■□□□□ 0.64
COL18A1-204ENST00000400337 AARSP49588 968 aaKnown RBP eCLIP19.02■□□□□ 0.642e-6■■■■■ 42
COL18A1-204ENST00000400337 ERFP50548 548 aa19.02■□□□□ 0.64
COL18A1-204ENST00000400337 EARS2Q5JPH6 523 aaKnown RBP19.02■□□□□ 0.64
COL18A1-204ENST00000400337 ZNF720Q7Z2F6 126 aa19.02■□□□□ 0.64
COL18A1-204ENST00000400337 DCP1BQ8IZD4 617 aaKnown RBP19.02■□□□□ 0.64
COL18A1-204ENST00000400337 KRT35Q92764 455 aa19.02■□□□□ 0.64
COL18A1-204ENST00000400337 E2F8A0AVK6 867 aa19.02■□□□□ 0.64
COL18A1-204ENST00000400337 AKAP3O75969 853 aa19.02■□□□□ 0.64
COL18A1-204ENST00000400337 FAM200BP0CF97 657 aa19.02■□□□□ 0.64
COL18A1-204ENST00000400337 ELMO2Q96JJ3 720 aa19.02■□□□□ 0.64
COL18A1-204ENST00000400337 SHMT1P34896 483 aa19.02■□□□□ 0.64
COL18A1-204ENST00000400337 PDAP1Q13442 181 aaKnown RBP19.02■□□□□ 0.64
COL18A1-204ENST00000400337 CASS4Q9NQ75 786 aa19.02■□□□□ 0.64
COL18A1-204ENST00000400337 C20orf96Q9NUD7 363 aaPredicted RBP19.02■□□□□ 0.64
COL18A1-204ENST00000400337 UBQLN1Q9UMX0 589 aaKnown RBP19.02■□□□□ 0.64
COL18A1-204ENST00000400337 NWD1Q149M9 1564 aa19.02■□□□□ 0.63
COL18A1-204ENST00000400337 SETSIPP0DME0 302 aa19.02■□□□□ 0.63
COL18A1-204ENST00000400337 IFNA8P32881 189 aa19.02■□□□□ 0.63
COL18A1-204ENST00000400337 PGM1P36871 562 aa19.02■□□□□ 0.63
COL18A1-204ENST00000400337 NBPF12Q5TAG4 269 aaPredicted RBP19.02■□□□□ 0.63
COL18A1-204ENST00000400337 PBXIP1Q96AQ6 731 aa19.02■□□□□ 0.63
COL18A1-204ENST00000400337 LSM7Q9UK45 103 aaKnown RBP19.02■□□□□ 0.63
COL18A1-204ENST00000400337 USP15Q9Y4E8 981 aaPredicted RBP19.02■□□□□ 0.63
COL18A1-204ENST00000400337 CYP11B1P15538 503 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 KRT4P19013 534 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 PNPLA4P41247 253 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 RAD23BP54727 409 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 CXCL9Q07325 125 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 FBXO16Q8IX29 292 aaPredicted RBP19.01■□□□□ 0.63
COL18A1-204ENST00000400337 FUCA2Q9BTY2 467 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 ROPN1BQ9BZX4 212 aaPredicted RBP19.01■□□□□ 0.63
COL18A1-204ENST00000400337 ROPN1Q9HAT0 212 aaPredicted RBP19.01■□□□□ 0.63
COL18A1-204ENST00000400337 PXMP2Q9NR77 195 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 COL3A1P02461 1466 aaPredicted RBP19.01■□□□□ 0.63
COL18A1-204ENST00000400337 STK25O00506 426 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 PCNX4Q63HM2 1172 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 SLC25A41Q8N5S1 370 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 IPMKQ8NFU5 416 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 TASP1Q9H6P5 420 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 DYRK4Q9NR20 520 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 EEF1DP29692 281 aaKnown RBP19.01■□□□□ 0.63
COL18A1-204ENST00000400337 PSMC6P62333 389 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms