RNA–Protein interactions for RNA: ENST00000378122.4

PCDHA9-201, Transcript of protocadherin alpha 9, humanhuman

BASIC

Gene PCDHA9, Length 6,900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-201ENST00000378122 PRKCQQ04759 706 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 MTM1Q13496 603 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 C12orf60Q5U649 245 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 LRRC34Q8IZ02 419 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 MANSC1Q9H8J5 431 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 TBC1D23Q9NUY8 699 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 MTO1Q9Y2Z2 717 aaKnown RBP12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 ZSCAN9O15535 394 aaPredicted RBP12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 CSE1LP55060 971 aaKnown RBP12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 USP33Q8TEY7 942 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 ABHD8Q96I13 439 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 TMEM39BQ9GZU3 492 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 TTLL13PA6NNM8 815 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 VHLP40337 213 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 ALDH1A3P47895 512 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 ARMC6Q6NXE6 501 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 FUT8Q9BYC5 575 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 UVRAGQ9P2Y5 699 aa12.54□□□□□ -0.4
PCDHA9-201ENST00000378122 B2RBV5 119 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 SRP72O76094 671 aaKnown RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 VCAM1P19320 739 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 DSG1Q02413 1049 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 CEP68Q76N32 757 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 ZNF280CQ8ND82 737 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 NSL1Q96IY1 281 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 RAB6BQ9NRW1 208 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 CDYLQ9Y232 598 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 CHD1O14646 1710 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 DUOXA2Q1HG44 320 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 SEPT8Q92599 483 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 C20orf96Q9NUD7 363 aaPredicted RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 PRG3Q9Y2Y8 225 aaPredicted RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 FOXP2O15409 715 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 NQO1P15559 274 aaKnown RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 EPB42P16452 691 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 EME1Q96AY2 570 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 NSUN4Q96CB9 384 aaKnown RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 DEFB129Q9H1M3 183 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 E9PCH4 1651 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 WEE2P0C1S8 567 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 MAPK9P45984 424 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 SLC29A2Q14542 456 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 C3orf62Q6ZUJ4 267 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 PLD3Q8IV08 490 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 PLEKHA5Q9HAU0 1116 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 CHCHD3Q9NX63 227 aaKnown RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 LSM7Q9UK45 103 aaKnown RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 TSC22D4Q9Y3Q8 395 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 TMCC1O94876 653 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 APOA1P02647 267 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 PDHBP11177 359 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 KCNJ1P48048 391 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 TPI1P60174 286 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 MRPS35P82673 323 aaKnown RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 MRPL28Q13084 256 aaKnown RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 KYNUQ16719 465 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 EPS8L3Q8TE67 593 aaKnown RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 SNRNP27Q8WVK2 155 aaKnown RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 SGSM3Q96HU1 749 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 ROPN1BQ9BZX4 212 aaPredicted RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 ROPN1Q9HAT0 212 aaPredicted RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 PAIP2BQ9ULR5 123 aaKnown RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 CDH16O75309 829 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 DEAF1O75398 565 aaPredicted RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 MYL2P10916 166 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 KLRC1P26715 233 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 COILP38432 576 aaPredicted RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 SCTRP47872 440 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 CHI3L2Q15782 390 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 IER5Q5VY09 327 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 TAGAPQ8N103 731 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 HTATIP2Q9BUP3 242 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 MRPL1Q9BYD6 325 aaKnown RBP12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 TASP1Q9H6P5 420 aa12.53□□□□□ -0.4
PCDHA9-201ENST00000378122 AP3M2P53677 418 aa12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 TRIP10Q15642 601 aa12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 SMTNL2Q2TAL5 461 aa12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 LINC00116Q8NCU8 138 aa12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 NEDD1Q8NHV4 660 aa12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 TMEM143Q96AN5 459 aa12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 ACSF2Q96CM8 615 aaPredicted RBP12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 OPTNQ96CV9 577 aa12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 TMEM169Q96HH4 297 aa12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 H3BQF6 201 aa12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 ITIH4Q14624 930 aa12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 TRIM48Q8IWZ4 208 aa12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 SP8Q8IXZ3 490 aa12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 ZBTB10Q96DT7 871 aa12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 CCT7Q99832 543 aa12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 EPB41L4AQ9HCS5 686 aaPredicted RBP12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 CACNA2D2Q9NY47 1150 aa12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 C6orf203Q9P0P8 240 aaPredicted RBP12.52□□□□□ -0.4
PCDHA9-201ENST00000378122 ADCY3O60266 1144 aa12.52□□□□□ -0.41
PCDHA9-201ENST00000378122 PRKCBP05771 671 aa12.52□□□□□ -0.41
PCDHA9-201ENST00000378122 CD44P16070 742 aaKnown RBP12.52□□□□□ -0.41
PCDHA9-201ENST00000378122 PLOD1Q02809 727 aaPredicted RBP12.52□□□□□ -0.41
PCDHA9-201ENST00000378122 CYLC2Q14093 348 aaPredicted RBP12.52□□□□□ -0.41
PCDHA9-201ENST00000378122 SNRNP35Q16560 246 aaKnown RBP12.52□□□□□ -0.41
PCDHA9-201ENST00000378122 COBLL1Q53SF7 1204 aa12.52□□□□□ -0.41
PCDHA9-201ENST00000378122 TMC7Q7Z402 723 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms