RNA–Protein interactions for RNA: ENST00000376724.6

TRIM40-206, Transcript of tripartite motif containing 40, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene TRIM40, Length 2,006 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-206ENST00000376724 SMIM28A0A1B0GU29 152 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 MED7O43513 233 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 ZRANB2O95218 330 aaKnown RBP eCLIP13.73□□□□□ -0.21
TRIM40-206ENST00000376724 LSM8O95777 96 aaKnown RBP13.73□□□□□ -0.21
TRIM40-206ENST00000376724 CHRNA1P02708 482 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 HMGCRP04035 888 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 TUBBP07437 444 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 MMP8P22894 467 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 THPOP40225 353 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 APLP1P51693 650 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 NDST1P52848 882 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 C1QBPQ07021 282 aaKnown RBP13.73□□□□□ -0.21
TRIM40-206ENST00000376724 PTP4A2Q12974 167 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 ZBTB6Q15916 424 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 PTGISQ16647 500 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 DAB2IPQ5VWQ8 1189 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 GSPT2Q8IYD1 628 aaKnown RBP13.73□□□□□ -0.21
TRIM40-206ENST00000376724 WDTC1Q8N5D0 677 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 SMG8Q8ND04 991 aaKnown RBP13.73□□□□□ -0.21
TRIM40-206ENST00000376724 KLHDC9Q8NEP7 349 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 VCPIP1Q96JH7 1222 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 WNT8AQ9H1J5 351 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 CARD9Q9H257 536 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 MRPL47Q9HD33 250 aaKnown RBP13.73□□□□□ -0.21
TRIM40-206ENST00000376724 ST3GAL5Q9UNP4 418 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 PAEPP09466 180 aa13.72□□□□□ -0.21
TRIM40-206ENST00000376724 ITGA4P13612 1032 aa13.72□□□□□ -0.21
TRIM40-206ENST00000376724 MCM3P25205 808 aa13.72□□□□□ -0.21
TRIM40-206ENST00000376724 HTRA3P83110 453 aa13.72□□□□□ -0.21
TRIM40-206ENST00000376724 PTPN11Q06124 597 aaPredicted RBP13.72□□□□□ -0.21
TRIM40-206ENST00000376724 KCTD19Q17RG1 926 aaPredicted RBP13.72□□□□□ -0.21
TRIM40-206ENST00000376724 CYP4A22Q5TCH4 519 aa13.72□□□□□ -0.21
TRIM40-206ENST00000376724 SERINC5Q86VE9 423 aa13.72□□□□□ -0.21
TRIM40-206ENST00000376724 ERICH1Q86X53 443 aa13.72□□□□□ -0.21
TRIM40-206ENST00000376724 ARRDC4Q8NCT1 418 aa13.72□□□□□ -0.21
TRIM40-206ENST00000376724 CD101Q93033 1021 aa13.72□□□□□ -0.21
TRIM40-206ENST00000376724 FAXDC2Q96IV6 333 aa13.72□□□□□ -0.21
TRIM40-206ENST00000376724 GOLGA2P5Q9HBQ8 144 aa13.72□□□□□ -0.21
TRIM40-206ENST00000376724 PARVAQ9NVD7 372 aa13.72□□□□□ -0.21
TRIM40-206ENST00000376724 TMEM59LQ9UK28 342 aa13.72□□□□□ -0.21
TRIM40-206ENST00000376724 UBQLN1Q9UMX0 589 aaKnown RBP13.72□□□□□ -0.21
TRIM40-206ENST00000376724 PCDHGC3Q9UN70 934 aa13.72□□□□□ -0.21
TRIM40-206ENST00000376724 GRIN2DO15399 1336 aa13.72□□□□□ -0.21
TRIM40-206ENST00000376724 CALB1P05937 261 aa13.71□□□□□ -0.21
TRIM40-206ENST00000376724 IBSPP21815 317 aaPredicted RBP13.71□□□□□ -0.21
TRIM40-206ENST00000376724 PEX5P50542 639 aa13.71□□□□□ -0.21
TRIM40-206ENST00000376724 NKX3-2P78367 333 aa13.71□□□□□ -0.21
TRIM40-206ENST00000376724 BEND6Q5SZJ8 279 aaPredicted RBP13.71□□□□□ -0.21
TRIM40-206ENST00000376724 C9orf57Q5W0N0 161 aa13.71□□□□□ -0.21
TRIM40-206ENST00000376724 CCSAPQ6IQ19 270 aaPredicted RBP13.71□□□□□ -0.21
TRIM40-206ENST00000376724 PLEKHA7Q6IQ23 1121 aa13.71□□□□□ -0.21
TRIM40-206ENST00000376724 PPP1R2P3Q6NXS1 205 aa13.71□□□□□ -0.21
TRIM40-206ENST00000376724 HNRNPLLQ8WVV9 542 aaKnown RBP13.71□□□□□ -0.21
TRIM40-206ENST00000376724 ZNF518BQ9C0D4 1074 aa13.71□□□□□ -0.21
TRIM40-206ENST00000376724 DDX47Q9H0S4 455 aaKnown RBP13.71□□□□□ -0.21
TRIM40-206ENST00000376724 TMEM51Q9NW97 253 aa13.71□□□□□ -0.21
TRIM40-206ENST00000376724 STIM2Q9P246 746 aa13.71□□□□□ -0.21
TRIM40-206ENST00000376724 DDX20Q9UHI6 824 aaKnown RBP13.71□□□□□ -0.21
TRIM40-206ENST00000376724 BARX2Q9UMQ3 279 aaPredicted RBP13.71□□□□□ -0.21
TRIM40-206ENST00000376724 NOD1Q9Y239 953 aa13.71□□□□□ -0.21
TRIM40-206ENST00000376724 USTQ9Y2C2 406 aa13.71□□□□□ -0.21
TRIM40-206ENST00000376724 SCINQ9Y6U3 715 aa13.71□□□□□ -0.21
TRIM40-206ENST00000376724 CASP8AP2Q9UKL3 1982 aa13.71□□□□□ -0.21
TRIM40-206ENST00000376724 CCDC66A2RUB6 948 aa13.71□□□□□ -0.22
TRIM40-206ENST00000376724 STAU1O95793 577 aaKnown RBP13.71□□□□□ -0.22
TRIM40-206ENST00000376724 MYBL2P10244 700 aa13.71□□□□□ -0.22
TRIM40-206ENST00000376724 PYGMP11217 842 aa13.71□□□□□ -0.22
TRIM40-206ENST00000376724 CTNNA1P35221 906 aaKnown RBP13.71□□□□□ -0.22
TRIM40-206ENST00000376724 VEGFBP49765 207 aa13.71□□□□□ -0.22
TRIM40-206ENST00000376724 RPL7AP62424 266 aaKnown RBP13.71□□□□□ -0.22
TRIM40-206ENST00000376724 LLGL1Q15334 1064 aa13.71□□□□□ -0.22
TRIM40-206ENST00000376724 GLE1Q53GS7 698 aaKnown RBP13.71□□□□□ -0.22
TRIM40-206ENST00000376724 RNF180Q86T96 592 aa13.71□□□□□ -0.22
TRIM40-206ENST00000376724 PCSK9Q8NBP7 692 aaKnown RBP13.71□□□□□ -0.22
TRIM40-206ENST00000376724 ZBTB9Q96C00 473 aa13.71□□□□□ -0.22
TRIM40-206ENST00000376724 GDAP1L1Q96MZ0 367 aa13.71□□□□□ -0.22
TRIM40-206ENST00000376724 MRPL45Q9BRJ2 306 aaKnown RBP13.71□□□□□ -0.22
TRIM40-206ENST00000376724 OSBPL7Q9BZF2 842 aa13.71□□□□□ -0.22
TRIM40-206ENST00000376724 SENP6Q9GZR1 1112 aaPredicted RBP13.71□□□□□ -0.22
TRIM40-206ENST00000376724 CYTH4Q9UIA0 394 aa13.71□□□□□ -0.22
TRIM40-206ENST00000376724 PCDHA3Q9Y5H8 950 aa13.71□□□□□ -0.22
TRIM40-206ENST00000376724 BRCA2P51587 3418 aa13.7□□□□□ -0.22
TRIM40-206ENST00000376724 ZSCAN5CA6NGD5 496 aaPredicted RBP13.7□□□□□ -0.22
TRIM40-206ENST00000376724 MEIS3P2A8K0S8 358 aa13.7□□□□□ -0.22
TRIM40-206ENST00000376724 M0QYV0 167 aa13.7□□□□□ -0.22
TRIM40-206ENST00000376724 RAD51CO43502 376 aa13.7□□□□□ -0.22
TRIM40-206ENST00000376724 SASH3O75995 380 aa13.7□□□□□ -0.22
TRIM40-206ENST00000376724 MICAL2O94851 1124 aa13.7□□□□□ -0.22
TRIM40-206ENST00000376724 HEXIM1O94992 359 aaKnown RBP13.7□□□□□ -0.22
TRIM40-206ENST00000376724 GLI1P08151 1106 aa13.7□□□□□ -0.22
TRIM40-206ENST00000376724 SSR1P43307 286 aaKnown RBP13.7□□□□□ -0.22
TRIM40-206ENST00000376724 SGO2Q562F6 1265 aa13.7□□□□□ -0.22
TRIM40-206ENST00000376724 SEL1L2Q5TEA6 688 aa13.7□□□□□ -0.22
TRIM40-206ENST00000376724 DNAJC24Q6P3W2 148 aa13.7□□□□□ -0.22
TRIM40-206ENST00000376724 CCNI2Q6ZMN8 369 aaPredicted RBP13.7□□□□□ -0.22
TRIM40-206ENST00000376724 C12orf29Q8N999 325 aa13.7□□□□□ -0.22
TRIM40-206ENST00000376724 UBA3Q8TBC4 463 aa13.7□□□□□ -0.22
TRIM40-206ENST00000376724 FEZF2Q8TBJ5 459 aa13.7□□□□□ -0.22
TRIM40-206ENST00000376724 ZFP42Q96MM3 310 aa13.7□□□□□ -0.22
TRIM40-206ENST00000376724 MCEEQ96PE7 176 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms