RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 VPS53Q5VIR6 699 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 CAMKK1Q8N5S9 505 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 PSD4Q8NDX1 1056 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 TPSD1Q9BZJ3 242 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 ETAA1Q9NY74 926 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 CALCOCO1Q9P1Z2 691 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 ADGRA2Q96PE1 1338 aa2.91□□□□□ -1.94
VPS13A-206ENST00000376646 A0A0B4J269 797 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 NR2F6P10588 404 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 CCND1P24385 295 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 ITPKBP27987 946 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 PRDX5P30044 214 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 NDUFV1P49821 464 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 ADKP55263 362 aaKnown RBP2.9□□□□□ -1.94
VPS13A-206ENST00000376646 PIGFQ07326 219 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 FOXF2Q12947 444 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 TUBB3Q13509 450 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 PTPROQ16827 1216 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 PPP4R3AQ6IN85 833 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 TTC7BQ86TV6 843 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 PPP1R3BQ86XI6 285 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 CELF5Q8N6W0 485 aaKnown RBP2.9□□□□□ -1.94
VPS13A-206ENST00000376646 PCSK9Q8NBP7 692 aaKnown RBP2.9□□□□□ -1.94
VPS13A-206ENST00000376646 POC1BQ8TC44 478 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 DPF1Q92782 380 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 NELL1Q92832 810 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 ABCF2Q9UG63 623 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 ENTPD2Q9Y5L3 495 aa2.9□□□□□ -1.94
VPS13A-206ENST00000376646 WDR27A2RRH5 827 aa2.9□□□□□ -1.95
VPS13A-206ENST00000376646 WIPF3A6NGB9 483 aa2.9□□□□□ -1.95
VPS13A-206ENST00000376646 PDCP20941 246 aa2.9□□□□□ -1.95
VPS13A-206ENST00000376646 SMARCA1P28370 1054 aa2.9□□□□□ -1.95
VPS13A-206ENST00000376646 POU6F2P78424 691 aaPredicted RBP2.9□□□□□ -1.95
VPS13A-206ENST00000376646 SP2Q02086 613 aa2.9□□□□□ -1.95
VPS13A-206ENST00000376646 NHLH1Q02575 133 aa2.9□□□□□ -1.95
VPS13A-206ENST00000376646 HABP2Q14520 560 aaPredicted RBP2.9□□□□□ -1.95
VPS13A-206ENST00000376646 RBM20Q5T481 1227 aaKnown RBP2.9□□□□□ -1.95
VPS13A-206ENST00000376646 GLCCI1Q86VQ1 547 aa2.9□□□□□ -1.95
VPS13A-206ENST00000376646 FAM90A1Q86YD7 464 aa2.9□□□□□ -1.95
VPS13A-206ENST00000376646 MIER2Q8N344 545 aa2.9□□□□□ -1.95
VPS13A-206ENST00000376646 SCAMP4Q969E2 229 aa2.9□□□□□ -1.95
VPS13A-206ENST00000376646 PGBD1Q96JS3 809 aa2.9□□□□□ -1.95
VPS13A-206ENST00000376646 ACTRT3Q9BYD9 372 aa2.9□□□□□ -1.95
VPS13A-206ENST00000376646 RNF7Q9UBF6 113 aa2.9□□□□□ -1.95
VPS13A-206ENST00000376646 PCDHA1Q9Y5I3 950 aa2.9□□□□□ -1.95
VPS13A-206ENST00000376646 CFAP20Q9Y6A4 193 aaKnown RBP2.9□□□□□ -1.95
VPS13A-206ENST00000376646 DNAJC9-AS1A6NH13 148 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 M0QYG6 137 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 KRTAP5-8O75690 187 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 ERBB2P04626 1255 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 GNAI3P08754 354 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 EBLN1P0CF75 366 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 GPD1P21695 349 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 PIK3CGP48736 1102 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 GNAI1P63096 354 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 SRSF4Q08170 494 aaKnown RBP2.89□□□□□ -1.95
VPS13A-206ENST00000376646 NOGQ13253 232 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 HLXQ14774 488 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-206ENST00000376646 PTPRRQ15256 657 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 HEATR3Q7Z4Q2 680 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 SRRM1Q8IYB3 904 aaKnown RBP2.89□□□□□ -1.95
VPS13A-206ENST00000376646 AOPEPQ8N6M6 819 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 RFKQ969G6 155 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 SARAFQ96BY9 339 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 HAPLN3Q96S86 360 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 TINAGL1Q9GZM7 467 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-206ENST00000376646 SERHLQ9NQF3 203 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 COL4A3BPQ9Y5P4 624 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 COL3A1P02461 1466 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-206ENST00000376646 PPM1DO15297 605 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 FTLP02792 175 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-206ENST00000376646 MAP2K6P52564 334 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 KRT85P78386 507 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 EXOSC9Q06265 439 aaKnown RBP2.89□□□□□ -1.95
VPS13A-206ENST00000376646 GRASPQ7Z6J2 395 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-206ENST00000376646 ANKRD13AQ8IZ07 590 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 C3orf20Q8ND61 904 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 RGMAQ96B86 450 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 TIMP4Q99727 224 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 SLC13A1Q9BZW2 595 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 AMBRA1Q9C0C7 1298 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 PCDH12Q9NPG4 1184 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 KLC4Q9NSK0 619 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 NEU2Q9Y3R4 380 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 AOX1Q06278 1338 aa2.89□□□□□ -1.95
VPS13A-206ENST00000376646 hCG_2014768A0A024R1R8 64 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 HMGB1P09429 215 aaKnown RBP2.88□□□□□ -1.95
VPS13A-206ENST00000376646 RARBP10826 455 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 JUPP14923 745 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 IBSPP21815 317 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-206ENST00000376646 PCSK6P29122 969 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 ZNF134P52741 427 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 KRTAP10-6P60371 365 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-206ENST00000376646 ITIH3Q06033 890 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 KIF22Q14807 665 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 TBCCQ15814 346 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 NBPF8Q3BBV2 869 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 BRDTQ58F21 947 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-206ENST00000376646 PDSS2Q86YH6 399 aa2.88□□□□□ -1.95
VPS13A-206ENST00000376646 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms