RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 CLEC16AQ2KHT3 1053 aa13.01□□□□□ -0.33
VPS13A-204ENST00000376634 THTPAQ9BU02 230 aa13.01□□□□□ -0.33
VPS13A-204ENST00000376634 MTIF3Q9H2K0 278 aaKnown RBP13.01□□□□□ -0.33
VPS13A-204ENST00000376634 RANBP17Q9H2T7 1088 aaKnown RBP13.01□□□□□ -0.33
VPS13A-204ENST00000376634 AGTP01019 485 aa13.01□□□□□ -0.33
VPS13A-204ENST00000376634 STAG2Q8N3U4 1231 aa13.01□□□□□ -0.33
VPS13A-204ENST00000376634 BATF3Q9NR55 127 aa13.01□□□□□ -0.33
VPS13A-204ENST00000376634 FHOD1Q9Y613 1164 aa13.01□□□□□ -0.33
VPS13A-204ENST00000376634 NEO1Q92859 1461 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 DYRK3O43781 588 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 HARS2P49590 506 aaKnown RBP13□□□□□ -0.33
VPS13A-204ENST00000376634 CYP51A1Q16850 503 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 GLYCTKQ8IVS8 523 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 SEPT5Q99719 369 aaPredicted RBP13□□□□□ -0.33
VPS13A-204ENST00000376634 USP17L10C9JJH3 530 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 TRIM49P0CI25 452 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 TRIM49CP0CI26 452 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 RRM2P31350 389 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 TRIM25Q14258 630 aaKnown RBP13□□□□□ -0.33
VPS13A-204ENST00000376634 CNGA2Q16280 664 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 IFNEQ86WN2 208 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 CHSY1Q86X52 802 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 RNF149Q8NC42 400 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 SLC7A14Q8TBB6 771 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 MAP3K13O43283 966 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 USP10Q14694 798 aaKnown RBP13□□□□□ -0.33
VPS13A-204ENST00000376634 CCDC81Q6ZN84 652 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 TUFT1Q9NNX1 390 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 TUBGCP4Q9UGJ1 667 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 KIAA0391O15091 583 aaKnown RBP13□□□□□ -0.33
VPS13A-204ENST00000376634 EPB42P16452 691 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 ALFQ53S48 1182 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 TTC33Q6PID6 262 aaPredicted RBP13□□□□□ -0.33
VPS13A-204ENST00000376634 GTF2A1LQ9UNN4 478 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 TRPC5OSA6NMA1 111 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 ENO4A6NNW6 628 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 P4HBP07237 508 aaKnown RBP13□□□□□ -0.33
VPS13A-204ENST00000376634 RPAP3Q9H6T3 665 aaPredicted RBP13□□□□□ -0.33
VPS13A-204ENST00000376634 CNGB3Q9NQW8 809 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 USP11P51784 963 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 LAMC2Q13753 1193 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 ARMCX4Q5H9R4 360 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 ECSITQ9BQ95 431 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 LY9Q9HBG7 655 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 ASB14A6NK59 587 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 TCN1P20061 433 aaPredicted RBP13□□□□□ -0.33
VPS13A-204ENST00000376634 RBP5P82980 135 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 HIST2H2ACQ16777 129 aaPredicted RBP13□□□□□ -0.33
VPS13A-204ENST00000376634 HIST2H2AA3Q6FI13 130 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 TMEM154Q6P9G4 183 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 RHBDL2Q9NX52 303 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 CPDO75976 1380 aa13□□□□□ -0.33
VPS13A-204ENST00000376634 EPS8L2Q9H6S3 715 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 ADGRL3Q9HAR2 1447 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 APEX2Q9UBZ4 518 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 ZNF335Q9H4Z2 1342 aaPredicted RBP12.99□□□□□ -0.33
VPS13A-204ENST00000376634 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.99□□□□□ -0.33
VPS13A-204ENST00000376634 NCOA4Q13772 614 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 WDR72Q3MJ13 1102 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 CINPQ9BW66 212 aaPredicted RBP12.99□□□□□ -0.33
VPS13A-204ENST00000376634 ANTXR1Q9H6X2 564 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 MROH7-TTC4A0A0A0MT08 1334 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 KIF28PB7ZC32 967 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 MICU2Q8IYU8 434 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 SLC30A1Q9Y6M5 507 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 LOC102724159A0A0B4J2E5 919 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 PVALEFA0A1B0GWK0 134 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 ALDH1A3P47895 512 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 PWP2Q15269 919 aaKnown RBP12.99□□□□□ -0.33
VPS13A-204ENST00000376634 RTL3Q8N8U3 475 aaKnown RBP12.99□□□□□ -0.33
VPS13A-204ENST00000376634 USP13Q92995 863 aaPredicted RBP12.99□□□□□ -0.33
VPS13A-204ENST00000376634 KATNAL1Q9BW62 490 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 WDR35Q9P2L0 1181 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 CHN1P15882 459 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 SPRP35270 261 aaPredicted RBP12.99□□□□□ -0.33
VPS13A-204ENST00000376634 GAS2L3Q86XJ1 694 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 P3H2Q8IVL5 708 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 STN1Q9H668 368 aaKnown RBP12.99□□□□□ -0.33
VPS13A-204ENST00000376634 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.99□□□□□ -0.33
VPS13A-204ENST00000376634 VCLP18206 1134 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 STILQ15468 1287 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 PKN2Q16513 984 aaKnown RBP12.99□□□□□ -0.33
VPS13A-204ENST00000376634 CAPN10Q9HC96 672 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 NDUFB5O43674 189 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 CDH18Q13634 790 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 TMEM47Q9BQJ4 181 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 STK33Q9BYT3 514 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 FHDC1Q9C0D6 1143 aaPredicted RBP12.99□□□□□ -0.33
VPS13A-204ENST00000376634 CACNA1CQ13936 2221 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 IRF1P10914 325 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 USP39Q53GS9 565 aaKnown RBP12.99□□□□□ -0.33
VPS13A-204ENST00000376634 ERAP2Q6P179 960 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 CPA5Q8WXQ8 436 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 AGPAT1Q99943 283 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 PARVBQ9HBI1 364 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 AMACRQ9UHK6 382 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 ADAM30Q9UKF2 790 aa12.99□□□□□ -0.33
VPS13A-204ENST00000376634 C11orf88Q6PI97 169 aa12.98□□□□□ -0.33
VPS13A-204ENST00000376634 IPMKQ8NFU5 416 aa12.98□□□□□ -0.33
VPS13A-204ENST00000376634 CENPTQ96BT3 561 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms