RNA–Protein interactions for RNA: ENST00000369407.3

PHGDH-201, Transcript of phosphoglycerate dehydrogenase, humanhuman

TSL 2

Gene PHGDH, Length 3,180 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-201ENST00000369407 RAB20Q9NX57 234 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 SMG5Q9UPR3 1016 aaKnown RBP12.96□□□□□ -0.33
PHGDH-201ENST00000369407 STK24Q9Y6E0 443 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 UBE4BO95155 1302 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 UMODL1Q5DID0 1318 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 C10orf71Q711Q0 1435 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 DNALI1O14645 258 aaPredicted RBP12.96□□□□□ -0.33
PHGDH-201ENST00000369407 BAG2O95816 211 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 TPP2P29144 1249 aaPredicted RBP12.96□□□□□ -0.33
PHGDH-201ENST00000369407 DSG3P32926 999 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 NSFP46459 744 aaKnown RBP12.96□□□□□ -0.33
PHGDH-201ENST00000369407 CENPCQ03188 943 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 MTMR2Q13614 643 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 MSS51Q4VC12 460 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 FAM102BQ5T8I3 360 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 PLA2G4FQ68DD2 849 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 TXNRD3NBQ6F5E7 133 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 SV2AQ7L0J3 742 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 ALYREFQ86V81 257 aaKnown RBP12.96□□□□□ -0.33
PHGDH-201ENST00000369407 SHKBP1Q8TBC3 707 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 MAIP1Q8WWC4 291 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 FAM161BQ96MY7 647 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 CDCA7Q9BWT1 371 aaPredicted RBP12.96□□□□□ -0.33
PHGDH-201ENST00000369407 KRT82Q9NSB4 513 aa12.96□□□□□ -0.33
PHGDH-201ENST00000369407 SGK1O00141 431 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 TRAFD1O14545 582 aaPredicted RBP12.95□□□□□ -0.34
PHGDH-201ENST00000369407 ESRRAP11474 423 aaPredicted RBP12.95□□□□□ -0.34
PHGDH-201ENST00000369407 UNGP13051 313 aaPredicted RBP12.95□□□□□ -0.34
PHGDH-201ENST00000369407 ARFIP2P53365 341 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 NRLP54845 237 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 LRRC36Q1X8D7 754 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 MFSD7Q6UXD7 560 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 PTCD3Q96EY7 689 aaKnown RBP12.95□□□□□ -0.34
PHGDH-201ENST00000369407 NSL1Q96IY1 281 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 TMEM206Q9H813 350 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 NYAP2Q9P242 653 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 FAM237BA0A1B0GVD1 139 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 RNF8O76064 485 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 PROSCO94903 275 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 TJP3O95049 919 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 BGNP21810 368 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 RPL7AP62424 266 aaKnown RBP12.95□□□□□ -0.34
PHGDH-201ENST00000369407 ANKRD22Q5VYY1 191 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 MIER3Q7Z3K6 550 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 ARHGAP22Q7Z5H3 698 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 NLRX1Q86UT6 975 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 FBXL13Q8NEE6 735 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 CCDC17Q96LX7 622 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 TTC1Q99614 292 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 TEKT3Q9BXF9 490 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 TLE6Q9H808 572 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 MANSC1Q9H8J5 431 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 PSMC3IPQ9P2W1 217 aaPredicted RBP12.95□□□□□ -0.34
PHGDH-201ENST00000369407 LIASO43766 372 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 POTEJP0CG39 1038 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 GCLCP48506 637 aaPredicted RBP12.95□□□□□ -0.34
PHGDH-201ENST00000369407 NFX1Q12986 1120 aaKnown RBP12.95□□□□□ -0.34
PHGDH-201ENST00000369407 ABCB5Q2M3G0 1257 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 TRAPPC3LQ5T215 181 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 ISLR2Q6UXK2 745 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 RHOT1Q8IXI2 618 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 RIBC1Q8N443 379 aaPredicted RBP12.95□□□□□ -0.34
PHGDH-201ENST00000369407 BBOF1Q8ND07 529 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 GBP5Q96PP8 586 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 TSSK1BQ9BXA7 367 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 OCEL1Q9H607 264 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 ZNF395Q9H8N7 513 aaPredicted RBP12.95□□□□□ -0.34
PHGDH-201ENST00000369407 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.95□□□□□ -0.349e-8■■■□□ 19.1
PHGDH-201ENST00000369407 LNPEPQ9UIQ6 1025 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 ZHX2Q9Y6X8 837 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 MYPNQ86TC9 1320 aa12.95□□□□□ -0.34
PHGDH-201ENST00000369407 G3V3G9 751 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 H3BRJ5 948 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 TLR3O15455 904 aaKnown RBP12.94□□□□□ -0.34
PHGDH-201ENST00000369407 P4HA2O15460 535 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 MAP3K7O43318 606 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 ECE2O60344 883 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 ENO1P06733 434 aaKnown RBP12.94□□□□□ -0.34
PHGDH-201ENST00000369407 ABHD2P08910 425 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 POLR2MP0CAP2 368 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 PGM1P36871 562 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 ALCAMQ13740 583 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 SLC5A9Q2M3M2 681 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 WDR72Q3MJ13 1102 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 FNBP1LQ5T0N5 605 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 DCAF8Q5TAQ9 597 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 RGS9BPQ6ZS82 235 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 FAM196AQ6ZSG2 479 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 PPFIBP2Q8ND30 876 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 TEKT1Q969V4 418 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 IFT43Q96FT9 208 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 FAM111AQ96PZ2 611 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 TRIM55Q9BYV6 548 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 WDR11Q9BZH6 1224 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 RHBDL2Q9NX52 303 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 CLUHO75153 1309 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 E5RJQ4 531 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 LMNAP02545 664 aaKnown RBP12.94□□□□□ -0.34
PHGDH-201ENST00000369407 KRT1P04264 644 aa12.94□□□□□ -0.34
PHGDH-201ENST00000369407 CYP1A1P04798 512 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms