RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 SF3B3Q15393 1217 aaKnown RBP19.18■□□□□ 0.66
SHANK1-202ENST00000359082 ATF7IP2Q5U623 682 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 DDX42Q86XP3 938 aaKnown RBP eCLIP19.18■□□□□ 0.66
SHANK1-202ENST00000359082 SPATA18Q8TC71 538 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 DIS3LQ8TF46 1054 aaKnown RBP19.18■□□□□ 0.66
SHANK1-202ENST00000359082 AGBL1Q96MI9 1066 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 KCNK16Q96T55 309 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 SHCBP1LQ9BZQ2 653 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 KLHL2O95198 593 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 FDX1P10109 184 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 GTF2H1P32780 548 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 KRT35Q92764 455 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 OVOS2A0A0G2JMS6 1433 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 OVOS2A0A0J9YW53 1432 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 OVOS2Q6IE36 1432 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 ZBTB39O15060 712 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 C6orf222P0C671 652 aaPredicted RBP19.18■□□□□ 0.66
SHANK1-202ENST00000359082 MAGEA4P43358 317 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 CHMP1BQ7LBR1 199 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 CCT8L2Q96SF2 557 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 C7orf25Q9BPX7 421 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 CELF4Q9BZC1 486 aaKnown RBP19.18■□□□□ 0.66
SHANK1-202ENST00000359082 GIMAP4Q9NUV9 329 aa19.18■□□□□ 0.66
SHANK1-202ENST00000359082 KDM6BO15054 1643 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 NPM3O75607 178 aaKnown RBP19.17■□□□□ 0.66
SHANK1-202ENST00000359082 BRD2P25440 801 aaKnown RBP19.17■□□□□ 0.66
SHANK1-202ENST00000359082 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.17■□□□□ 0.66
SHANK1-202ENST00000359082 FAM71DQ8N9W8 422 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 MANSC1Q9H8J5 431 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 FAM107AO95990 144 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 MLNP12872 115 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 COMTP21964 271 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 ARMC6Q6NXE6 501 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 CLEC10AQ8IUN9 316 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 CHORDC1Q9UHD1 332 aaPredicted RBP19.17■□□□□ 0.66
SHANK1-202ENST00000359082 LAMC1P11047 1609 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 CD4P01730 458 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 CPA2P48052 419 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 PRKCEQ02156 737 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 DAB2IPQ5VWQ8 1189 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 LRRC71Q8N4P6 559 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 CCDC134Q9H6E4 229 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 GID8Q9NWU2 228 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 PAK5Q9P286 719 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 LZTS3O60299 673 aaPredicted RBP19.17■□□□□ 0.66
SHANK1-202ENST00000359082 NPTXRO95502 500 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 COG2Q14746 738 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 SCN3BQ9NY72 215 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 A0A1B0GTH6 734 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 IL18RAPO95256 599 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 GPAT2Q6NUI2 795 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 SMIM5Q71RC9 77 aa19.17■□□□□ 0.66
SHANK1-202ENST00000359082 CDR2LQ86X02 465 aaPredicted RBP19.17■□□□□ 0.66
SHANK1-202ENST00000359082 MTO1Q9Y2Z2 717 aaKnown RBP19.17■□□□□ 0.66
SHANK1-202ENST00000359082 HLA-DRAP01903 254 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 ALDH6A1Q02252 535 aaKnown RBP19.16■□□□□ 0.66
SHANK1-202ENST00000359082 MROH9Q5TGP6 573 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 POTEAQ6S8J7 498 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 TNIP2Q8NFZ5 429 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 XPO6Q96QU8 1125 aaKnown RBP19.16■□□□□ 0.66
SHANK1-202ENST00000359082 NT5C1AQ9BXI3 368 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 SLC39A10Q9ULF5 831 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 FLT1P17948 1338 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 AFF2P51816 1311 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 PGK2P07205 417 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 RGS4P49798 205 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 RUNX1T1Q06455 604 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 IER5Q5VY09 327 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 STOX1Q6ZVD7 989 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 DNAJC7Q99615 494 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.16■□□□□ 0.66
SHANK1-202ENST00000359082 PNPLA7Q6ZV29 1317 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 B2RBV5 119 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 NCAM1P13591 858 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 PTPN7P35236 360 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 PDK1Q15118 436 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 EPC2Q52LR7 807 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 C10orf120Q5SQS8 335 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 EFCAB12Q6NXP0 572 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 SGMS1Q86VZ5 419 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 JAMLQ86YT9 394 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 CALML6Q8TD86 181 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 KIF2CQ99661 725 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 PLA2R1Q13018 1463 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 MYMKA6NI61 221 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 EIF3HO15372 352 aaKnown RBP eCLIP19.16■□□□□ 0.66
SHANK1-202ENST00000359082 TRIP10Q15642 601 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 GJB7Q6PEY0 223 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 BLOC1S6Q9UL45 172 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 PCDHB7Q9Y5E2 793 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 BBS7Q8IWZ6 715 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 CINPQ9BW66 212 aaPredicted RBP19.16■□□□□ 0.66
SHANK1-202ENST00000359082 RAD18Q9NS91 495 aa19.16■□□□□ 0.66
SHANK1-202ENST00000359082 PNMA8BQ9ULN7 279 aaPredicted RBP19.16■□□□□ 0.66
SHANK1-202ENST00000359082 NAB2Q15742 525 aa19.15■□□□□ 0.66
SHANK1-202ENST00000359082 PRUNE1Q86TP1 453 aa19.15■□□□□ 0.66
SHANK1-202ENST00000359082 MTA3Q9BTC8 594 aa19.15■□□□□ 0.66
SHANK1-202ENST00000359082 TMEM120BA0PK00 339 aa19.15■□□□□ 0.66
SHANK1-202ENST00000359082 HNRNPRO43390 633 aaKnown RBP19.15■□□□□ 0.66
SHANK1-202ENST00000359082 CDC42EP1Q00587 391 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms