RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 ALS2CR12Q96Q35 445 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 THAP2Q9H0W7 228 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 TBX21Q9UL17 535 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 CTAGE9A4FU28 777 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 PODXLO00592 558 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 ENPP3O14638 875 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 CXCL10P02778 98 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 CFHP08603 1231 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 SSTR3P32745 418 aaPredicted RBP19.89■□□□□ 0.77
CLN3-204ENST00000357857 CYP2C18P33260 490 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 ORC1Q13415 861 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 IFI16Q16666 785 aaKnown RBP19.89■□□□□ 0.77
CLN3-204ENST00000357857 SOWAHAQ2M3V2 549 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 PASD1Q8IV76 773 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 RFFLQ8WZ73 363 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 TFAP2BQ92481 460 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 CYFIP2Q96F07 1278 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 NAPGQ99747 312 aaPredicted RBP19.89■□□□□ 0.77
CLN3-204ENST00000357857 ZSWIM1Q9BR11 485 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 NT5C1AQ9BXI3 368 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 TMEM39AQ9NV64 488 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 CACNG4Q9UBN1 327 aa19.89■□□□□ 0.77
CLN3-204ENST00000357857 CASTOR2A6NHX0 329 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 MED7O43513 233 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 CLTBP09497 229 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 NOP2P46087 812 aaKnown RBP19.88■□□□□ 0.77
CLN3-204ENST00000357857 CLCNKBP51801 687 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 NOMO3P69849 1222 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 GPC5P78333 572 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 CENPCQ03188 943 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 LRRC26Q2I0M4 334 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 NAA35Q5VZE5 725 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 ELAC1Q9H777 363 aaKnown RBP19.88■□□□□ 0.77
CLN3-204ENST00000357857 TMEM161AQ9NX61 479 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 PCDHGC3Q9UN70 934 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 MICAL3Q7RTP6 2002 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 TTC3P53804 2025 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 HUS1O60921 280 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 NSFP46459 744 aaKnown RBP19.88■□□□□ 0.77
CLN3-204ENST00000357857 TUSC3Q13454 348 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 CLLU1OSQ5K130 101 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 PPP1R2P3Q6NXS1 205 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 NECAB2Q7Z6G3 386 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 APPL2Q8NEU8 664 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 URGCPQ8TCY9 931 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 CPA5Q8WXQ8 436 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 ARHGEF26Q96DR7 871 aa19.88■□□□□ 0.77
CLN3-204ENST00000357857 DDX27Q96GQ7 796 aaKnown RBP19.88■□□□□ 0.77
CLN3-204ENST00000357857 LSM8O95777 96 aaKnown RBP19.87■□□□□ 0.77
CLN3-204ENST00000357857 VDRP11473 427 aa19.87■□□□□ 0.77
CLN3-204ENST00000357857 UPP1Q16831 310 aa19.87■□□□□ 0.77
CLN3-204ENST00000357857 TCTN1Q2MV58 587 aa19.87■□□□□ 0.77
CLN3-204ENST00000357857 DPH6Q7L8W6 267 aa19.87■□□□□ 0.77
CLN3-204ENST00000357857 LIMS2Q7Z4I7 341 aa19.87■□□□□ 0.77
CLN3-204ENST00000357857 UNC93AQ86WB7 457 aa19.87■□□□□ 0.77
CLN3-204ENST00000357857 TOP6BLQ8N6T0 577 aa19.87■□□□□ 0.77
CLN3-204ENST00000357857 OR6B3Q8NGW1 331 aa19.87■□□□□ 0.77
CLN3-204ENST00000357857 HEXIM2Q96MH2 286 aaKnown RBP19.87■□□□□ 0.77
CLN3-204ENST00000357857 UROC1Q96N76 676 aa19.87■□□□□ 0.77
CLN3-204ENST00000357857 KIAA1257Q9ULG3 409 aa19.87■□□□□ 0.77
CLN3-204ENST00000357857 L1RE1Q9UN81 338 aa19.87■□□□□ 0.77
CLN3-204ENST00000357857 URI1O94763 535 aaPredicted RBP19.86■□□□□ 0.77
CLN3-204ENST00000357857 FGFR1P11362 822 aa19.86■□□□□ 0.77
CLN3-204ENST00000357857 SGO2Q562F6 1265 aa19.86■□□□□ 0.77
CLN3-204ENST00000357857 NOMO2Q5JPE7 1267 aa19.86■□□□□ 0.77
CLN3-204ENST00000357857 COL13A1Q5TAT6 717 aaPredicted RBP19.86■□□□□ 0.77
CLN3-204ENST00000357857 RHOT2Q8IXI1 618 aa19.86■□□□□ 0.77
CLN3-204ENST00000357857 SLC35G2Q8TBE7 412 aa19.86■□□□□ 0.77
CLN3-204ENST00000357857 KBTBD7Q8WVZ9 684 aa19.86■□□□□ 0.77
CLN3-204ENST00000357857 ZNF653Q96CK0 615 aa19.86■□□□□ 0.77
CLN3-204ENST00000357857 SNX25Q9H3E2 840 aa19.86■□□□□ 0.77
CLN3-204ENST00000357857 GTF3C4Q9UKN8 822 aa19.86■□□□□ 0.77
CLN3-204ENST00000357857 CEP83Q9Y592 693 aa19.86■□□□□ 0.77
CLN3-204ENST00000357857 PCDHB7Q9Y5E2 793 aa19.86■□□□□ 0.77
CLN3-204ENST00000357857 PCDHGC5Q9Y5F6 944 aa19.86■□□□□ 0.77
CLN3-204ENST00000357857 CYB561D2O14569 222 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 PALMO75781 387 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 DEFB128Q7Z7B8 93 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 ADGRF2Q8IZF7 708 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 MCOLN2Q8IZK6 566 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 TMEM35BQ8NCS4 154 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 TPCN2Q8NHX9 752 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 TRIM11Q96F44 468 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 SENP8Q96LD8 212 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 PAAF1Q9BRP4 392 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 ZNF518BQ9C0D4 1074 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 NME7Q9Y5B8 376 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 GRID2IPA4D2P6 1211 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 A8MXQ7 604 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 CYP1A2P05177 515 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 FAM163BP0C2L3 166 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 WARSP23381 471 aaKnown RBP19.85■□□□□ 0.77
CLN3-204ENST00000357857 IGFBP6P24592 240 aaPredicted RBP19.85■□□□□ 0.77
CLN3-204ENST00000357857 CDH5P33151 784 aaPredicted RBP19.85■□□□□ 0.77
CLN3-204ENST00000357857 GNL1P36915 607 aaPredicted RBP19.85■□□□□ 0.77
CLN3-204ENST00000357857 TCEAL1Q15170 157 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 DENND1BQ6P3S1 775 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 MON1BQ7L1V2 547 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 PHF13Q86YI8 300 aaPredicted RBP19.85■□□□□ 0.77
CLN3-204ENST00000357857 PDCL2Q8N4E4 241 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms