RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 CDT1Q9H211 546 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 BRMS1Q9HCU9 246 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 THG1LQ9NWX6 298 aaKnown RBP12.21□□□□□ -0.45
RTN3-204ENST00000354497 MAFFQ9ULX9 164 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 SLC27A5Q9Y2P5 690 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 TIMM13Q9Y5L4 95 aaPredicted RBP12.21□□□□□ -0.45
RTN3-204ENST00000354497 F5P12259 2224 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 CEP295Q9C0D2 2601 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 RNF40O75150 1001 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 MED24O75448 989 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 PRAMEF12O95522 483 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 GABRR2P28476 465 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 EFNA5P52803 228 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 CYP4F8P98187 520 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 PLCB2Q00722 1185 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 DUSP4Q13115 394 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 FSTL4Q6MZW2 842 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 SASS6Q6UVJ0 657 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 RUFY3Q7L099 469 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 DEFB124Q8NES8 71 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 GATA6Q92908 595 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 ZNF274Q96GC6 653 aaPredicted RBP12.2□□□□□ -0.46
RTN3-204ENST00000354497 NACC1Q96RE7 527 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 TCHPQ9BT92 498 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 LRRC3Q9BY71 257 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 TMEM9BQ9NQ34 198 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 TNFSF13BQ9Y275 285 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 INVSQ9Y283 1065 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 LNP1A1A4G5 178 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 K7ERI5 159 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 KHNYNO15037 678 aaKnown RBP12.2□□□□□ -0.46
RTN3-204ENST00000354497 SOAT2O75908 522 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 EGFP01133 1207 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 SPATA31C1P0DKV0 1188 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 CYP11B2P19099 503 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 RPL9P32969 192 aaKnown RBP12.2□□□□□ -0.46
RTN3-204ENST00000354497 MCM2P49736 904 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 FOSBP53539 338 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 YWHAHQ04917 246 aaPredicted RBP12.2□□□□□ -0.46
RTN3-204ENST00000354497 PSMD2Q13200 908 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 KARSQ15046 597 aaKnown RBP12.2□□□□□ -0.46
RTN3-204ENST00000354497 SKOR2Q2VWA4 1001 aaPredicted RBP12.2□□□□□ -0.46
RTN3-204ENST00000354497 USP37Q86T82 979 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 CATSPER3Q86XQ3 398 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 ACAP3Q96P50 834 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 GCNAQ96QF7 691 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 DNAJC25Q9H1X3 360 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 TUFT1Q9NNX1 390 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 TPCN1Q9ULQ1 816 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 CYP46A1Q9Y6A2 500 aa12.2□□□□□ -0.46
RTN3-204ENST00000354497 BCLAF3A2AJT9 711 aaKnown RBP12.19□□□□□ -0.46
RTN3-204ENST00000354497 CCDC169A6NNP5 214 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 HYAL3O43820 417 aaPredicted RBP12.19□□□□□ -0.46
RTN3-204ENST00000354497 FGF19O95750 216 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 CEACAM1P13688 526 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 U2AF2P26368 475 aaKnown RBP eCLIP12.19□□□□□ -0.463e-6■■■□□ 15.2
RTN3-204ENST00000354497 CDR1P51861 262 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 DGKEP52429 567 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 GABPB1Q06547 395 aaPredicted RBP12.19□□□□□ -0.46
RTN3-204ENST00000354497 C8orf34Q49A92 452 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 TRIM68Q6AZZ1 485 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 ALKAL1Q6UXT8 129 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 GAREM2Q75VX8 874 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 CENPQQ7L2Z9 268 aaPredicted RBP12.19□□□□□ -0.46
RTN3-204ENST00000354497 CAMKK1Q8N5S9 505 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 TTC16Q8NEE8 873 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 RPLP0P6Q8NHW5 317 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 MKNK1Q9BUB5 465 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 CRISPLD1Q9H336 500 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 GKN1Q9NS71 199 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 OBP2AQ9NY56 170 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 FAM13BQ9NYF5 915 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 TUBGCP4Q9UGJ1 667 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 WASF3Q9UPY6 502 aa12.19□□□□□ -0.46
RTN3-204ENST00000354497 CNOT1A5YKK6 2376 aaKnown RBP12.19□□□□□ -0.46
RTN3-204ENST00000354497 SPEGQ15772 3267 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 CCDC66A2RUB6 948 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 PATE3B3GLJ2 98 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 VNN2O95498 520 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 APBB3O95704 486 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 KCNE1P15382 129 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 CSRP1P21291 193 aaKnown RBP12.18□□□□□ -0.46
RTN3-204ENST00000354497 SCRN1Q12765 414 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 TAF12Q16514 161 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 XKR4Q5GH76 650 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 TMEM196Q5HYL7 178 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 DSTYKQ6XUX3 929 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 CYP2U1Q7Z449 544 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 DNAJB7Q7Z6W7 309 aaPredicted RBP12.18□□□□□ -0.46
RTN3-204ENST00000354497 ITIH5Q86UX2 942 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 TMEM130Q8N3G9 435 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 ERMNQ8TAM6 284 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 SEPT5Q99719 369 aaPredicted RBP12.18□□□□□ -0.46
RTN3-204ENST00000354497 ACO2Q99798 780 aaKnown RBP12.18□□□□□ -0.46
RTN3-204ENST00000354497 MRPL4Q9BYD3 311 aaKnown RBP12.18□□□□□ -0.46
RTN3-204ENST00000354497 PANK2Q9BZ23 570 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 TPSD1Q9BZJ3 242 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 EBF3Q9H4W6 596 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 TASP1Q9H6P5 420 aa12.18□□□□□ -0.46
RTN3-204ENST00000354497 CNTN3Q9P232 1028 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms