RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 EIF2AK2P19525 551 aaKnown RBP16.78■□□□□ 0.28
HMGA1-202ENST00000347617 SLC1A1P43005 524 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 KCNJ1P48048 391 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 JAK3P52333 1124 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 WDR4P57081 412 aaKnown RBP16.78■□□□□ 0.28
HMGA1-202ENST00000347617 KRT76Q01546 638 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 C1orf186Q6ZWK4 172 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 MIER3Q7Z3K6 550 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 TPH2Q8IWU9 490 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 PPFIBP2Q8ND30 876 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 SLC20A1Q8WUM9 679 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 FAM210AQ96ND0 272 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 NUP85Q9BW27 656 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 TRIM4Q9C037 500 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 MMADHCQ9H3L0 296 aaPredicted RBP16.78■□□□□ 0.28
HMGA1-202ENST00000347617 ELP3Q9H9T3 547 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.78■□□□□ 0.28
HMGA1-202ENST00000347617 AGTPBP1Q9UPW5 1226 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 A0A0G2JMZ2 1700 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 TCRBV7S2A1N4TA0A589 114 aa16.77■□□□□ 0.28
HMGA1-202ENST00000347617 MAGEA13PA6NCF6 341 aa16.77■□□□□ 0.28
HMGA1-202ENST00000347617 PDLIM1O00151 329 aa16.77■□□□□ 0.28
HMGA1-202ENST00000347617 CCDC22O60826 627 aa16.77■□□□□ 0.28
HMGA1-202ENST00000347617 TROVE2P10155 538 aaKnown RBP eCLIP16.77■□□□□ 0.28
HMGA1-202ENST00000347617 TARSP26639 723 aaKnown RBP16.77■□□□□ 0.28
HMGA1-202ENST00000347617 CYP4A11Q02928 519 aa16.77■□□□□ 0.28
HMGA1-202ENST00000347617 CCDC6Q16204 474 aa16.77■□□□□ 0.28
HMGA1-202ENST00000347617 TREML2Q5T2D2 321 aa16.77■□□□□ 0.28
HMGA1-202ENST00000347617 ZNF720Q7Z2F6 126 aa16.77■□□□□ 0.28
HMGA1-202ENST00000347617 C12orf56Q8IXR9 622 aa16.77■□□□□ 0.28
HMGA1-202ENST00000347617 KIFAP3Q92845 792 aa16.77■□□□□ 0.28
HMGA1-202ENST00000347617 TIPINQ9BVW5 301 aa16.77■□□□□ 0.28
HMGA1-202ENST00000347617 DCLK3Q9C098 648 aa16.77■□□□□ 0.28
HMGA1-202ENST00000347617 MLXIPLQ9NP71 852 aa16.77■□□□□ 0.28
HMGA1-202ENST00000347617 UBE2TQ9NPD8 197 aaPredicted RBP16.77■□□□□ 0.28
HMGA1-202ENST00000347617 SLC25A27O95847 323 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 T-ENOLP0DO92 83 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 DLATP10515 647 aaKnown RBP16.77■□□□□ 0.27
HMGA1-202ENST00000347617 ADCY8P40145 1251 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 SNRPFP62306 86 aaKnown RBP16.77■□□□□ 0.27
HMGA1-202ENST00000347617 CDR2Q01850 454 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 GNPTABQ3T906 1256 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 EPC2Q52LR7 807 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 ZC3H12AQ5D1E8 599 aaKnown RBP16.77■□□□□ 0.27
HMGA1-202ENST00000347617 ZNF746Q6NUN9 644 aaPredicted RBP16.77■□□□□ 0.27
HMGA1-202ENST00000347617 DLK2Q6UY11 383 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 C4orf50Q6ZRC1 276 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 FAM47EQ6ZV65 393 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 SDCCAG8Q86SQ7 713 aaPredicted RBP16.77■□□□□ 0.27
HMGA1-202ENST00000347617 FAM71AQ8IYT1 594 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 CYP4X1Q8N118 509 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 ARHGAP24Q8N264 748 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 SMC6Q96SB8 1091 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 SYT15Q9BQS2 421 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 SLC24A2Q9UI40 661 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 ZFP69BQ9UJL9 534 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 NOCTQ9UK39 431 aaKnown RBP16.77■□□□□ 0.27
HMGA1-202ENST00000347617 C2CD2Q9Y426 696 aa16.77■□□□□ 0.27
HMGA1-202ENST00000347617 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.77■□□□□ 0.27
HMGA1-202ENST00000347617 NFASCO94856 1347 aa16.76■□□□□ 0.27
HMGA1-202ENST00000347617 CLDN3O15551 220 aa16.76■□□□□ 0.27
HMGA1-202ENST00000347617 MAPTP10636 758 aaKnown RBP16.76■□□□□ 0.27
HMGA1-202ENST00000347617 MYCLP12524 364 aaPredicted RBP16.76■□□□□ 0.27
HMGA1-202ENST00000347617 QARSP47897 775 aaKnown RBP16.76■□□□□ 0.27
HMGA1-202ENST00000347617 FKBP1BP68106 108 aa16.76■□□□□ 0.27
HMGA1-202ENST00000347617 KPNB1Q14974 876 aaKnown RBP16.76■□□□□ 0.27
HMGA1-202ENST00000347617 ANKS1BQ7Z6G8 1248 aa16.76■□□□□ 0.27
HMGA1-202ENST00000347617 FAM178BQ8IXR5 827 aa16.76■□□□□ 0.27
HMGA1-202ENST00000347617 C4orf19Q8IY42 314 aa16.76■□□□□ 0.27
HMGA1-202ENST00000347617 ZCCHC9Q8N567 271 aaKnown RBP16.76■□□□□ 0.27
HMGA1-202ENST00000347617 ZNF653Q96CK0 615 aa16.76■□□□□ 0.27
HMGA1-202ENST00000347617 TRIM11Q96F44 468 aa16.76■□□□□ 0.27
HMGA1-202ENST00000347617 IFT43Q96FT9 208 aa16.76■□□□□ 0.27
HMGA1-202ENST00000347617 OTUD5Q96G74 571 aa16.76■□□□□ 0.27
HMGA1-202ENST00000347617 NR1H4Q96RI1 486 aaPredicted RBP16.76■□□□□ 0.27
HMGA1-202ENST00000347617 DENND2DQ9H6A0 471 aaPredicted RBP16.76■□□□□ 0.27
HMGA1-202ENST00000347617 CYLDQ9NQC7 956 aa16.76■□□□□ 0.27
HMGA1-202ENST00000347617 TCEAL9Q9UHQ7 104 aa16.76■□□□□ 0.27
HMGA1-202ENST00000347617 SRCAPQ6ZRS2 3230 aa16.76■□□□□ 0.27
HMGA1-202ENST00000347617 CHMP2AO43633 222 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 DKC1O60832 514 aaKnown RBP eCLIP16.75■□□□□ 0.27
HMGA1-202ENST00000347617 LRRN2O75325 713 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 AP1G2O75843 785 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 PDHA1P08559 390 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 CHRNB2P17787 502 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 GM2AP17900 193 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 EPHB2P29323 1055 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 NMT1P30419 496 aaKnown RBP16.75■□□□□ 0.27
HMGA1-202ENST00000347617 CYP2J2P51589 502 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 MCCD1P59942 119 aaPredicted RBP16.75■□□□□ 0.27
HMGA1-202ENST00000347617 CUL3Q13618 768 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 TTLL12Q14166 644 aaPredicted RBP16.75■□□□□ 0.27
HMGA1-202ENST00000347617 TMED2Q15363 201 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 CCNG2Q16589 344 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 HHATQ5VTY9 493 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 OR52E8Q6IFG1 317 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 GADL1Q6ZQY3 521 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 ZNF365Q70YC5 407 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 EPS8L1Q8TE68 723 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 GTF3C2Q8WUA4 911 aaPredicted RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms