RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 VPS37BQ9H9H4 285 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 CYP4F11Q9HBI6 524 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 MCM9Q9NXL9 1143 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 KCTD5Q9NXV2 234 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 LRWD1Q9UFC0 647 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 HMGXB4Q9UGU5 601 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 SMCO2A6NFE2 343 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 KPNA5O15131 536 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 NUAK1O60285 661 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 TRIM16O95361 564 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 TBXAS1P24557 533 aaPredicted RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 CHRNA3P32297 505 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 RPL9P32969 192 aaKnown RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 PFKPQ01813 784 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 GALNT3Q14435 633 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 HIC1Q14526 733 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 PPP2R5BQ15173 497 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ZFP1Q6P2D0 407 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ZNF410Q86VK4 478 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 CTAGE3PQ8IX95 158 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 FAM109AQ8N4B1 249 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 MCOLN3Q8TDD5 553 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ARL5BQ96KC2 179 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 KCNK16Q96T55 309 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 KIFC3Q9BVG8 833 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 KCNN2Q9H2S1 579 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 PNPLA3Q9NST1 481 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 TAB2Q9NYJ8 693 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 CNOT8Q9UFF9 292 aaKnown RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 TCEAL9Q9UHQ7 104 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 HAO1Q9UJM8 370 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 BTBD18B2RXH4 712 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ACOX3O15254 700 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 TEX33O43247 280 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SRGAP2CP0DJJ0 459 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 NAGAP17050 411 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 F8A1P23610 371 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 GSTM2P28161 218 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 EEF1DP29692 281 aaKnown RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 AFMP43652 599 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 AP2S1P53680 142 aaPredicted RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 LEXMQ3ZCV2 418 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 PTF1AQ7RTS3 328 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 PDSS2Q86YH6 399 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 CLYBLQ8N0X4 340 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ADAMTS16Q8TE57 1224 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SLC9A6Q92581 669 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 FAM161BQ96MY7 647 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 MED15Q96RN5 788 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 TBK1Q9UHD2 729 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 TAGLN3Q9UI15 199 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 MAPRE3Q9UPY8 281 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 MYRFQ9Y2G1 1151 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SLC12A7Q9Y666 1083 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 MAST3O60307 1309 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 TTC37Q6PGP7 1564 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 TMEM120BA0PK00 339 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ZBTB11O95625 1053 aaPredicted RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 DDX58O95786 925 aaKnown RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 APOA1P02647 267 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 FAM153BP0C7A2 387 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 RECQLP46063 649 aaPredicted RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 CASP5P51878 434 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 FOLH1Q04609 750 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ATP1A4Q13733 1029 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 POLA2Q14181 598 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 FAM153CQ494X1 144 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 KHDC1Q4VXA5 237 aaKnown RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 TIGD2Q4W5G0 525 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SLC10A5Q5PT55 438 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 C12orf60Q5U649 245 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ATG16L1Q676U5 607 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 NFRKBQ6P4R8 1299 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SYDE1Q6ZW31 735 aaPredicted RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 VASH1Q7L8A9 365 aaPredicted RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SH3BP5LQ7L8J4 393 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ECHDC2Q86YB7 292 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 FBXL16Q8N461 479 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ANKRD42Q8N9B4 389 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 OR10Z1Q8NGY1 313 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 HELQQ8TDG4 1101 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 KBTBD7Q8WVZ9 684 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 DACT3Q96B18 629 aaPredicted RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 RMND5BQ96G75 393 aaPredicted RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SLC39A13Q96H72 371 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ZNF641Q96N77 438 aaPredicted RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ERP44Q9BS26 406 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 MROQ9BYG7 248 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 MKRN2Q9H000 416 aaKnown RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ADNPQ9H2P0 1102 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 TMEM245Q9H330 911 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 KCNK13Q9HB14 408 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 COPG2Q9UBF2 871 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 FAM153AQ9UHL3 310 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SNX7Q9UNH6 387 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ADGRB2O60241 1585 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 A0A0B4J203 849 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SAC3D1A6NKF1 404 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 H7C0C1 242 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms