RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 IPO13O94829 963 aaKnown RBP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 ATE1O95260 518 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 GLUD1P00367 558 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 LGALS2P05162 132 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 PGRP06401 933 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 TOP1P11387 765 aaKnown RBP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 ATP5JP18859 108 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 FDXRP22570 491 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 MAP4P27816 1152 aaKnown RBP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 RAB15P59190 212 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 RASGRF1Q13972 1273 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 ZNF77Q15935 545 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 ZYXQ15942 572 aaKnown RBP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 ANKS3Q6ZW76 656 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 NLRX1Q86UT6 975 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 RBFAQ8N0V3 343 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 ATL2Q8NHH9 583 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 BSNDQ8WZ55 320 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 FAM3CQ92520 227 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 SGF29Q96ES7 293 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 FUBP3Q96I24 572 aaKnown RBP eCLIP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 NDNQ99608 321 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 MYD88Q99836 296 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 BOCQ9BWV1 1114 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 VN1R3Q9BXE9 311 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 IFIH1Q9BYX4 1025 aaKnown RBP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 SOX17Q9H6I2 414 aaPredicted RBP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 WDR26Q9H7D7 661 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 FN3KRPQ9HA64 309 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 THG1LQ9NWX6 298 aaKnown RBP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 KLK13Q9UKR3 277 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 ZNF451Q9Y4E5 1061 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 PCDHB7Q9Y5E2 793 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 MMP24Q9Y5R2 645 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 MYO9AB2RTY4 2548 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 HIVEP3Q5T1R4 2406 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 ATP8B3O60423 1300 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 HECTD1Q9ULT8 2610 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 RALGAPA1Q6GYQ0 2036 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 LNP1A1A4G5 178 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 ZNF891A8MT65 544 aaPredicted RBP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 H0Y858 1186 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 PIK3R2O00459 728 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 SH2B2O14492 632 aaPredicted RBP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 OFD1O75665 1012 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 C22orf31O95567 290 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 C8BP07358 591 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 HOXD4P09016 255 aaPredicted RBP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 KCNA2P16389 499 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 BPIP17213 487 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 IGFBP4P22692 258 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 CDC25AP30304 524 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 ADSSP30520 456 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 RABGGTBP53611 331 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 EPHA4P54764 986 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 JAG1P78504 1218 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 TLE1Q04724 770 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 CACNG1Q06432 222 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 NNTQ13423 1086 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 TRIP6Q15654 476 aaKnown RBP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 WDR44Q5JSH3 913 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 FAM160B1Q5W0V3 765 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 ZNF324BQ6AW86 544 aaPredicted RBP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 ADNP2Q6IQ32 1131 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 GALNT17Q6IS24 598 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 C7orf31Q8N865 590 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 C3orf58Q8NDZ4 430 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 FUBP1Q96AE4 644 aaKnown RBP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 SKA1Q96BD8 255 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 DDRGK1Q96HY6 314 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 FAM20AQ96MK3 541 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 PCGF6Q9BYE7 350 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 ACBD3Q9H3P7 528 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 TRIM45Q9H8W5 580 aaPredicted RBP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 C17orf75Q9HAS0 396 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 SH3GLB2Q9NR46 395 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 FOXD3Q9UJU5 478 aaPredicted RBP1.78□□□□□ -2.12
LINC00643-201ENST00000334389 PIAS3Q9Y6X2 628 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 BSNQ9UPA5 3926 aa1.78□□□□□ -2.12
LINC00643-201ENST00000334389 HECTD4Q9Y4D8 3996 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 A0A1W2PR77 199 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 A0A1W2PRG0 241 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 PMS2P1A4D2B8 440 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 ZBTB42B2RXF5 422 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 KIAA0391O15091 583 aaKnown RBP1.78□□□□□ -2.13
LINC00643-201ENST00000334389 ERBB2P04626 1255 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 GALTP07902 379 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 SLC3A2P08195 630 aaKnown RBP1.78□□□□□ -2.13
LINC00643-201ENST00000334389 EDN3P14138 238 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 ADD2P35612 726 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 PHKA2P46019 1235 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 PTENP60484 403 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 RPL15P61313 204 aaKnown RBP1.78□□□□□ -2.13
LINC00643-201ENST00000334389 SNRPFP62306 86 aaKnown RBP1.78□□□□□ -2.13
LINC00643-201ENST00000334389 ICA1Q05084 483 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 KCNAB2Q13303 367 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 LRP8Q14114 963 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 SART3Q15020 963 aaKnown RBP1.78□□□□□ -2.13
LINC00643-201ENST00000334389 USP41Q3LFD5 358 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 ITPRIPL2Q3MIP1 535 aa1.78□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms