RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 SGSM1Q2NKQ1 1148 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 ZNF667Q5HYK9 610 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 CT47A1Q5JQC4 288 aaPredicted RBP17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 RARS2Q5T160 578 aaKnown RBP17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 LIN9Q5TKA1 542 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 SYCE2Q6PIF2 218 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 SCARA5Q6ZMJ2 495 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 CREBRFQ8IUR6 639 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 OR10T2Q8NGX3 314 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 CNOT6LQ96LI5 555 aaKnown RBP17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 TMEM209Q96SK2 561 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 RTP3Q9BQQ7 232 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 PI4K2AQ9BTU6 479 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 IMPG2Q9BZV3 1241 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 PLEKHA4Q9H4M7 779 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 SFXN1Q9H9B4 322 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 TYRO3Q06418 890 aa17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 CBWD6Q4V339 395 aa17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 CBWD3Q5JTY5 395 aa17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 CBWD5Q5RIA9 395 aa17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 SPOPLQ6IQ16 392 aa17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 PTCRAQ6ISU1 281 aaPredicted RBP17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 C11orf57Q6ZUT1 292 aaPredicted RBP17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 DPH6Q7L8W6 267 aa17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 OSTM1Q86WC4 334 aa17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 SMRP1Q8NCR6 262 aa17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 ZNF461Q8TAF7 563 aa17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 HDAC7Q8WUI4 952 aa17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 KBTBD7Q8WVZ9 684 aa17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 TAF4BQ92750 862 aa17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 VRTNQ9H8Y1 702 aa17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 DDX43Q9NXZ2 648 aaKnown RBP17.04■□□□□ 0.32
CCDC28A-201ENST00000332797 UNC80Q8N2C7 3258 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 RFPL2O75678 378 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 ABLIM3O94929 683 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 ASS1P00966 412 aaKnown RBP17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 LHX1P48742 406 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 MARSP56192 900 aaKnown RBP17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 MYL7Q01449 175 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 SMAD4Q13485 552 aaKnown RBP17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 TPGS2Q68CL5 300 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 TMC5Q6UXY8 1006 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 RNF19BQ6ZMZ0 732 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 LIMS2Q7Z4I7 341 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 TRIM59Q8IWR1 403 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 CCDC150Q8NCX0 1101 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 FBXL13Q8NEE6 735 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 SLC7A14Q8TBB6 771 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 SPATA18Q8TC71 538 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 PGLYRP2Q96PD5 576 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 ASB2Q96Q27 587 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 MRPL45Q9BRJ2 306 aaKnown RBP17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 ZCWPW1Q9H0M4 648 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 THAP9Q9H5L6 903 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 SMYD3Q9H7B4 428 aa17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.03■□□□□ 0.32
CCDC28A-201ENST00000332797 GRXCR2A6NFK2 248 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 PRRG1O14668 218 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 MBTPS2O43462 519 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 HCRTO43612 131 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 C8AP07357 584 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 P4HA1P13674 534 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 ACAT1P24752 427 aaKnown RBP17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 ELF1P32519 619 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 RAP1GAPP47736 663 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 FMO5P49326 533 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 NOP14P78316 857 aaKnown RBP17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 TSPY1Q01534 308 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 ADCY1Q08828 1119 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 GPR17Q13304 367 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 SKOR2Q2VWA4 1001 aaPredicted RBP17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 PUS10Q3MIT2 529 aaKnown RBP17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 SLC39A12Q504Y0 691 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 HSP90AA4PQ58FG1 418 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 CES5AQ6NT32 575 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 IRF2BP1Q8IU81 584 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 SEMA4DQ92854 862 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 DNAJC25Q9H1X3 360 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 S1PR5Q9H228 398 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 SNX25Q9H3E2 840 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 CYP4F11Q9HBI6 524 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 AFF4Q9UHB7 1163 aaKnown RBP17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 CDH22Q9UJ99 828 aa17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 USP15Q9Y4E8 981 aaPredicted RBP17.02■□□□□ 0.32
CCDC28A-201ENST00000332797 CCDC195A0A1B0GUA6 201 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 GABRDO14764 452 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 N4BP1O75113 896 aaKnown RBP17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 LRRN2O75325 713 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 TACC1O75410 805 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 ZMYND10O75800 440 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 WEE2P0C1S8 567 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 ATF2P15336 505 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 WARSP23381 471 aaKnown RBP17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 PCSK1P29120 753 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 CDR1P51861 262 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 ITIH3Q06033 890 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 PPM1LQ5SGD2 360 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 CCDC149Q6ZUS6 474 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 FAM114A1Q8IWE2 563 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms