RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 C3orf70A6NLC5 250 aaPredicted RBP10.66□□□□□ -0.7
CHD3-201ENST00000330494 EEF1DP29692 281 aaKnown RBP10.66□□□□□ -0.7
CHD3-201ENST00000330494 SREBF2Q12772 1141 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 CLEC17AQ6ZS10 378 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 CCDC124Q96CT7 223 aaKnown RBP10.66□□□□□ -0.7
CHD3-201ENST00000330494 PACSIN1Q9BY11 444 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 IL17RBQ9NRM6 502 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 ZC3H7BQ9UGR2 993 aaKnown RBP10.66□□□□□ -0.7
CHD3-201ENST00000330494 B3GAT3O94766 335 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 EARS2Q5JPH6 523 aaKnown RBP10.66□□□□□ -0.7
CHD3-201ENST00000330494 USP6NLQ92738 828 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 ARHGEF26Q96DR7 871 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 OSBPL8Q9BZF1 889 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 HPS4Q9NQG7 708 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 ALG6Q9Y672 507 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 ITIH6Q6UXX5 1313 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 CASTOR2A6NHX0 329 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 FOXN3O00409 490 aaPredicted RBP10.66□□□□□ -0.7
CHD3-201ENST00000330494 HAUS5O94927 633 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 FGFR2P21802 821 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 ALDH1A3P47895 512 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 KDSRQ06136 332 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 BYSLQ13895 437 aaKnown RBP10.66□□□□□ -0.7
CHD3-201ENST00000330494 GIPC2Q8TF65 315 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 NOP53Q9NZM5 478 aaKnown RBP10.66□□□□□ -0.7
CHD3-201ENST00000330494 KCND2Q9NZV8 630 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 PCDHB2Q9Y5E7 798 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 C3orf62Q6ZUJ4 267 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 ADCK2Q7Z695 626 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 RNF180Q86T96 592 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 HS6ST3Q8IZP7 471 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 FEZF2Q8TBJ5 459 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 SH3TC2Q8TF17 1288 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 SEPT8Q92599 483 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 TRIM33Q9UPN9 1127 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 PCDHAC2Q9Y5I4 1007 aa10.66□□□□□ -0.7
CHD3-201ENST00000330494 TCRBV5S4A2TA0A5A2 114 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 ZC3H11AO75152 810 aaKnown RBP eCLIP10.65□□□□□ -0.7
CHD3-201ENST00000330494 AVPR1AP37288 418 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 NPTX2P47972 431 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 CUL3Q13618 768 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 PTPAQ15257 358 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 LRRC8EQ6NSJ5 796 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 DEFB128Q7Z7B8 93 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 ST13P4Q8IZP2 240 aaPredicted RBP10.65□□□□□ -0.7
CHD3-201ENST00000330494 ARMC2Q8NEN0 867 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 COG1Q8WTW3 980 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 FAM136AQ96C01 138 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 DDX4Q9NQI0 724 aaKnown RBP10.65□□□□□ -0.7
CHD3-201ENST00000330494 ANKEF1Q9NU02 776 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 HNRNPCP07910 306 aaKnown RBP eCLIP10.65□□□□□ -0.7
CHD3-201ENST00000330494 FAM200BP0CF97 657 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 HSPA8P11142 646 aaKnown RBP10.65□□□□□ -0.7
CHD3-201ENST00000330494 TTC23LQ6PF05 361 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 PTPRN2Q92932 1015 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 NIF3L1Q9GZT8 377 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 SEMA6BQ9H3T3 888 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 SMIM22K7EJ46 135 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 M0QYT0 321 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 SUPT20HL2P0C7V6 817 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 SLURP2P0DP57 97 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 RAD51Q06609 339 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 CUL2Q13617 745 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 GIT2Q14161 759 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 USP10Q14694 798 aaKnown RBP10.65□□□□□ -0.7
CHD3-201ENST00000330494 ATG4AQ8WYN0 398 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 AGO4Q9HCK5 861 aaKnown RBP10.65□□□□□ -0.7
CHD3-201ENST00000330494 LSM7Q9UK45 103 aaKnown RBP10.65□□□□□ -0.7
CHD3-201ENST00000330494 CARSP49589 748 aaKnown RBP10.65□□□□□ -0.7
CHD3-201ENST00000330494 EDRF1Q3B7T1 1238 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 SGO1Q5FBB7 561 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 C16orf87Q6PH81 154 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 PLEKHH3Q7Z736 793 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 SLC47A2Q86VL8 602 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 OTULINQ96BN8 352 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 TRIM15Q9C019 465 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 GPATCH2LQ9NWQ4 482 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 UVRAGQ9P2Y5 699 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 CLCA2Q9UQC9 943 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 ZBTB39O15060 712 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 CHN1P15882 459 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 DNAJB2P25686 324 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 MAP3K7CLP57077 242 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 ASAP3Q8TDY4 903 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 PDLIM2Q96JY6 352 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 OSMRQ99650 979 aa10.65□□□□□ -0.7
CHD3-201ENST00000330494 TIMM13Q9Y5L4 95 aaPredicted RBP10.65□□□□□ -0.7
CHD3-201ENST00000330494 TMEM247A6NEH6 219 aa10.65□□□□□ -0.71
CHD3-201ENST00000330494 CHUKO15111 745 aa10.65□□□□□ -0.71
CHD3-201ENST00000330494 ITGA8P53708 1063 aa10.65□□□□□ -0.71
CHD3-201ENST00000330494 TRAPPC12Q8WVT3 735 aa10.65□□□□□ -0.71
CHD3-201ENST00000330494 GLIS2Q9BZE0 524 aaPredicted RBP10.65□□□□□ -0.71
CHD3-201ENST00000330494 SHCBP1LQ9BZQ2 653 aa10.65□□□□□ -0.71
CHD3-201ENST00000330494 SLC38A7Q9NVC3 462 aa10.65□□□□□ -0.71
CHD3-201ENST00000330494 SETD4Q9NVD3 440 aa10.65□□□□□ -0.71
CHD3-201ENST00000330494 ARHGEF38Q9NXL2 777 aa10.65□□□□□ -0.71
CHD3-201ENST00000330494 KIAA0391O15091 583 aaKnown RBP10.64□□□□□ -0.71
CHD3-201ENST00000330494 HSPA9P38646 679 aaKnown RBP10.64□□□□□ -0.71
CHD3-201ENST00000330494 SYTL3Q4VX76 610 aa10.64□□□□□ -0.71
CHD3-201ENST00000330494 DDX50Q9BQ39 737 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms