RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 ARHGEF38Q9NXL2 777 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 WHRNQ9P202 907 aa18.13■□□□□ 0.49
SYNPO-201ENST00000307662 AKR1B1P15121 316 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 COBLL1Q53SF7 1204 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 FIGNQ5HY92 759 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 ZNF772Q68DY9 489 aaPredicted RBP18.12■□□□□ 0.49
SYNPO-201ENST00000307662 ZNF786Q8N393 782 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 SH3GL2Q99962 352 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 A0A087X0T9 212 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 ALBP02768 609 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 POLBP06746 335 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 FAM228BP0C875 321 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 PTPN4P29074 926 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 VCPP55072 806 aaKnown RBP18.12■□□□□ 0.49
SYNPO-201ENST00000307662 TRAF7Q6Q0C0 670 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 RNF146Q9NTX7 359 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 FBXO40Q9UH90 709 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 CDV3Q9UKY7 258 aaKnown RBP18.12■□□□□ 0.49
SYNPO-201ENST00000307662 CST8O60676 142 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 HSD17B4P51659 736 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 EFNA5P52803 228 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 NUP107P57740 925 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 UBE3AQ05086 875 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 SNRNP48Q6IEG0 339 aaKnown RBP18.12■□□□□ 0.49
SYNPO-201ENST00000307662 SCN4BQ8IWT1 228 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 TTLL6Q8N841 843 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 GPBP1L1Q9HC44 474 aaPredicted RBP18.12■□□□□ 0.49
SYNPO-201ENST00000307662 PRDM4Q9UKN5 801 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 MYO1GB0I1T2 1018 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 SULT1E1P49888 294 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 FXR2P51116 673 aaKnown RBP eCLIP18.12■□□□□ 0.49
SYNPO-201ENST00000307662 C4orf22Q6V702 233 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 SIK2Q9H0K1 926 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 PLEKHA5Q9HAU0 1116 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 HPSEQ9Y251 543 aa18.12■□□□□ 0.49
SYNPO-201ENST00000307662 MYO3AQ8NEV4 1616 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 ATP9AO75110 1047 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 PSMC3P17980 439 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 STILQ15468 1287 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 KYAT1Q16773 422 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 WDR72Q3MJ13 1102 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 MROH9Q5TGP6 573 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 ARHGEF1Q92888 912 aaKnown RBP18.11■□□□□ 0.49
SYNPO-201ENST00000307662 SENP2Q9HC62 589 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 TSR3Q9UJK0 312 aaKnown RBP18.11■□□□□ 0.49
SYNPO-201ENST00000307662 KRT33BQ14525 404 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 RRM2BQ7LG56 351 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 KLHL4Q9C0H6 718 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 GTF3C4Q9UKN8 822 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 CNTNAP5Q8WYK1 1306 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 TLR2O60603 784 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 NPEPPSP55786 919 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 MICU2Q8IYU8 434 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 RBP3P10745 1247 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 GJB7Q6PEY0 223 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 IZUMO2Q6UXV1 221 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 FAM162AQ96A26 154 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 TRIM62Q9BVG3 475 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 TMEM8AQ9HCN3 771 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 LMCD1Q9NZU5 365 aa18.11■□□□□ 0.49
SYNPO-201ENST00000307662 TRPC5OSA6NMA1 111 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 NCOA4Q13772 614 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 SBK1Q52WX2 424 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 MAP3K14Q99558 947 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 E2F8A0AVK6 867 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 MOCS2O96007 188 aaPredicted RBP18.1■□□□□ 0.49
SYNPO-201ENST00000307662 CSF1RP07333 972 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 TJAP1Q5JTD0 557 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 FEZF2Q8TBJ5 459 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 NSUN4Q96CB9 384 aaKnown RBP18.1■□□□□ 0.49
SYNPO-201ENST00000307662 MMTAG2Q9BU76 263 aaKnown RBP18.1■□□□□ 0.49
SYNPO-201ENST00000307662 CLPTM1O96005 669 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 CACNA2D1P54289 1103 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 STX5Q13190 355 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 ZC2HC1CQ53FD0 456 aaPredicted RBP18.1■□□□□ 0.49
SYNPO-201ENST00000307662 TDRD3Q9H7E2 651 aaKnown RBP18.1■□□□□ 0.49
SYNPO-201ENST00000307662 AFF4Q9UHB7 1163 aaKnown RBP18.1■□□□□ 0.49
SYNPO-201ENST00000307662 IQSEC2Q5JU85 1478 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 NFX1Q12986 1120 aaKnown RBP18.1■□□□□ 0.49
SYNPO-201ENST00000307662 WASHC2DQ5SRD0 308 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 MTDHQ86UE4 582 aaKnown RBP18.1■□□□□ 0.49
SYNPO-201ENST00000307662 TERB1Q8NA31 727 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 OTUB1Q96FW1 271 aaPredicted RBP18.1■□□□□ 0.49
SYNPO-201ENST00000307662 SHCBP1LQ9BZQ2 653 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 LACRTQ9GZZ8 138 aa18.1■□□□□ 0.49
SYNPO-201ENST00000307662 ABCA9Q8IUA7 1624 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 FKBP6O75344 327 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 USP1O94782 785 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 KCNK10P57789 538 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 MTM1Q13496 603 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 LAYNQ6UX15 382 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 FAM71DQ8N9W8 422 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 NMD3Q96D46 503 aaKnown RBP18.09■□□□□ 0.49
SYNPO-201ENST00000307662 KIF12Q96FN5 646 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 VPS50Q96JG6 964 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 ZNF556Q9HAH1 456 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 TAGLN3Q9UI15 199 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 NFIBO00712 420 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 PSTPIP1O43586 416 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 THRAP10827 490 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms