RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 FMR1Q06787 632 aaKnown RBP eCLIP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 TRAF3Q13114 568 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 KLHL24Q6TFL4 600 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 HES6Q96HZ4 224 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 ROPN1BQ9BZX4 212 aaPredicted RBP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 ROPN1Q9HAT0 212 aaPredicted RBP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 IP6K2Q9UHH9 426 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 MYH1P12882 1939 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 MYH2Q9UKX2 1941 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 MYH4Q9Y623 1939 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 SEC24AO95486 1093 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 KCNK10P57789 538 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 DGCR6Q14129 220 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 FUKQ8N0W3 1084 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 EFHD2Q96C19 240 aaPredicted RBP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 GPHNQ9NQX3 736 aaPredicted RBP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 A0A087WXM4 84 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 TYW5A2RUC4 315 aaKnown RBP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 PTGES3LE9PB15 166 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 HEATR6Q6AI08 1181 aaKnown RBP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 CLOCKO15516 846 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 WEE2P0C1S8 567 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 CYP19A1P11511 503 aaPredicted RBP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 OCLNQ16625 522 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 PODNQ7Z5L7 613 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 RNF26Q9BY78 433 aaPredicted RBP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 ALAS1P13196 640 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 GIMAP8Q8ND71 665 aaPredicted RBP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 NDFIP2Q9NV92 336 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 GHRP10912 638 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 IFI30P13284 250 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 ITGA3P26006 1051 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 AQP5P55064 265 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 TUBA1BP68363 451 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 GRSF1Q12849 480 aaKnown RBP eCLIP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 TUBA1AQ71U36 451 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 APPL2Q8NEU8 664 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 RNFT2Q96EX2 444 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 ANKZF1Q9H8Y5 726 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 CCNIQ14094 377 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 TRAPPC11Q7Z392 1133 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 RBBP8Q99708 897 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 NYXQ9GZU5 481 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 TRPV5Q9NQA5 729 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 RSL24D1Q9UHA3 163 aaKnown RBP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 BCS1LQ9Y276 419 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 ZBTB1Q9Y2K1 713 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 TRIM17Q9Y577 477 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 KDM5DQ9BY66 1539 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 HSPA2P54652 639 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 PROM2Q8N271 834 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 POC5Q8NA72 575 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 INTS2Q9H0H0 1204 aaKnown RBP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 LRRC4Q9HBW1 653 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 TRMT13Q9NUP7 481 aaKnown RBP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 PDK3Q15120 406 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 RHOT1Q8IXI2 618 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 HTRA1Q92743 480 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 KCTD14Q9BQ13 255 aaPredicted RBP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 BFARQ9NZS9 450 aa12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 UNC13DQ70J99 1090 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 KDELC2Q7Z4H8 507 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 ARHGEF19Q8IW93 802 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 ADSSL1Q8N142 457 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 MAGED4Q96JG8 741 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 ZNF682O95780 498 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 CDH6P55285 790 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 RORBQ92753 470 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 BTBD10Q9BSF8 475 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 ASNSD1Q9NWL6 643 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 CYP39A1Q9NYL5 469 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 CENPXA8MT69 81 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 PRPF3O43395 683 aaKnown RBP12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 BNIP3LO60238 219 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 PSIP1O75475 530 aaKnown RBP12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 TOB2Q14106 344 aaPredicted RBP12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 PLBD2Q8NHP8 589 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 SSH3Q8TE77 659 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 ZFP42Q96MM3 310 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 PCDH11YQ9BZA8 1340 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 TTLL1O95922 423 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 POU1F1P28069 291 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 IST1P53990 364 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 MSTO1Q9BUK6 570 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 CHMP1AQ9HD42 196 aaPredicted RBP12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 SLC12A4Q9UP95 1085 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 PCDH11XQ9BZA7 1347 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 THEMISQ8N1K5 641 aaPredicted RBP12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 PCDHGB4Q9UN71 923 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 PSMG1O95456 288 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 BCAR1P56945 870 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 LSM3P62310 102 aaKnown RBP12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 XRCC4Q13426 336 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 GALNTL6Q49A17 601 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 MYH7BA7E2Y1 1941 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 UBA6A0AVT1 1052 aaPredicted RBP12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 PSMD11O00231 422 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 RNMTO43148 476 aaKnown RBP12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 KRT33BQ14525 404 aa12.23□□□□□ -0.45
SHROOM3-201ENST00000296043 RUNDC3AQ59EK9 446 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms