RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 KCNK16Q96T55 309 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 TMA7Q9Y2S6 64 aaKnown RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 SLC16A4O15374 487 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 RGS5O15539 181 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 PDHBP11177 359 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 EIF2AK2P19525 551 aaKnown RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 QARSP47897 775 aaKnown RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 FAM167AQ96KS9 214 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 ZNF839A8K0R7 811 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 ZMYND8Q9ULU4 1186 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 AIM2O14862 343 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 CASP7P55210 303 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 TAP1Q03518 808 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 RCN1Q15293 331 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 WLSQ5T9L3 541 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 CCDC81Q6ZN84 652 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 SH2D3CQ8N5H7 860 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 SMAD5Q99717 465 aaKnown RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 MKNK1Q9BUB5 465 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 SLC9A2Q9UBY0 812 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 DAGLAQ9Y4D2 1042 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 LRRC37A3O60309 1634 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 IQCA1LA6NCM1 817 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 CCT8L1PA6NM43 557 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 ENO3P13929 434 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 PSMC5P62195 406 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 P3H1Q32P28 736 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 ARMCX4Q5H9R4 360 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 SPDYAQ5MJ70 313 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 SH3BP5LQ7L8J4 393 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 AFF4Q9UHB7 1163 aaKnown RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 RIC1Q4ADV7 1423 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 CAND2O75155 1236 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 NUP62P37198 522 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 RECQLP46063 649 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 SARSP49591 514 aaKnown RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 MYL2P10916 166 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 EIF2B2P49770 351 aaKnown RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 PTGISQ16647 500 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 TAS2R42Q7RTR8 314 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 OPTNQ96CV9 577 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 SP110Q9HB58 689 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 HPS4Q9NQG7 708 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 PSMC3IPQ9P2W1 217 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 P4HBP07237 508 aaKnown RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 SNRPFP62306 86 aaKnown RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 TTI2Q6NXR4 508 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 CCDC60Q8IWA6 550 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 ZBED2Q9BTP6 218 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 SLC40A1Q9NP59 571 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 HERC5Q9UII4 1024 aaKnown RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 IRAK1P51617 712 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 POLR3FQ9H1D9 316 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-201ENST00000295550 RAB21Q9UL25 225 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 MTO1Q9Y2Z2 717 aaKnown RBP10.3□□□□□ -0.76
COL6A3-201ENST00000295550 CYTH3O43739 400 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 GUCA1CO95843 209 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 RALBP11234 206 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 ZNF746Q6NUN9 644 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-201ENST00000295550 ANKS3Q6ZW76 656 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 SP8Q8IXZ3 490 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 C1orf54Q8WWF1 131 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 UBAP1Q9NZ09 502 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 VHLP40337 213 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 ARPP19P56211 112 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 TFDP2Q14188 446 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 GPD1LQ8N335 351 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 RMDN3Q96TC7 470 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 TRIM51Q9BSJ1 452 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 NDFIP2Q9NV92 336 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 SCN3BQ9NY72 215 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 V9GYQ6 96 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 DENND3A2RUS2 1198 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 PDZK1P1A8MUH7 402 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 KIAA0391O15091 583 aaKnown RBP10.3□□□□□ -0.76
COL6A3-201ENST00000295550 HERVK_113P62684 666 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 KCTD2Q14681 263 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 CRYMQ14894 314 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 MTERF2Q49AM1 385 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 RC3H1Q5TC82 1133 aaKnown RBP10.3□□□□□ -0.76
COL6A3-201ENST00000295550 PCYOX1LQ8NBM8 494 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 COL5A2P05997 1499 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-201ENST00000295550 FAM237AA0A1B0GTK4 181 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 SRP72O76094 671 aaKnown RBP10.3□□□□□ -0.76
COL6A3-201ENST00000295550 ANKS1AQ92625 1134 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 GLMNQ92990 594 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 PLEKP08567 350 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-201ENST00000295550 STAT4Q14765 748 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 C1orf228Q6PIY5 440 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 SH3KBP1Q96B97 665 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 RANBP17Q9H2T7 1088 aaKnown RBP10.3□□□□□ -0.76
COL6A3-201ENST00000295550 IL1RL2Q9HB29 575 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 DFFAO00273 331 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 SCP2P22307 547 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 ATXN3P54252 364 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-201ENST00000295550 KLHDC7AQ5VTJ3 777 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 TMEM35BQ8NCS4 154 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 LRFN2Q9ULH4 789 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 SEC23AQ15436 765 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 TRADDQ15628 312 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms