RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 MOGSQ13724 837 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 CCNG2Q16589 344 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 TSHZ1Q6ZSZ6 1077 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 ANKRD13AQ8IZ07 590 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 C2orf40Q9H1Z8 148 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 CNOT10Q9H9A5 744 aaKnown RBP21.26■□□□□ 0.99
VPS53-201ENST00000291074 TJP2Q9UDY2 1190 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 ANAPC5Q9UJX4 755 aa21.26■□□□□ 0.99
VPS53-201ENST00000291074 ACKR2O00590 384 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 KRT1P04264 644 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 KRT19P08727 400 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 MMP13P45452 471 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 DCUN1D2Q6PH85 259 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 MFSD7Q6UXD7 560 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 SYDE1Q6ZW31 735 aaPredicted RBP21.25■□□□□ 0.99
VPS53-201ENST00000291074 TRMT10CQ7L0Y3 403 aaKnown RBP21.25■□□□□ 0.99
VPS53-201ENST00000291074 TADA2BQ86TJ2 420 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 CDCA5Q96FF9 252 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 XPO6Q96QU8 1125 aaKnown RBP21.25■□□□□ 0.99
VPS53-201ENST00000291074 MPHOSPH6Q99547 160 aaKnown RBP21.25■□□□□ 0.99
VPS53-201ENST00000291074 TMEM109Q9BVC6 243 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 FAM129AQ9BZQ8 928 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 FZD8Q9H461 694 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 RNPEPQ9H4A4 650 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 RNF181Q9P0P0 153 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 CXCL11O14625 94 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 GAS2O43903 313 aaKnown RBP21.25■□□□□ 0.99
VPS53-201ENST00000291074 KYNUQ16719 465 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 TMEM35BQ8NCS4 154 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 CDT1Q9H211 546 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 DDX20Q9UHI6 824 aaKnown RBP21.25■□□□□ 0.99
VPS53-201ENST00000291074 PPME1Q9Y570 386 aa21.25■□□□□ 0.99
VPS53-201ENST00000291074 A0A087WUV0 522 aaPredicted RBP21.24■□□□□ 0.99
VPS53-201ENST00000291074 AGTP01019 485 aa21.24■□□□□ 0.99
VPS53-201ENST00000291074 CALB1P05937 261 aa21.24■□□□□ 0.99
VPS53-201ENST00000291074 MBTD1Q05BQ5 628 aa21.24■□□□□ 0.99
VPS53-201ENST00000291074 DENND1BQ6P3S1 775 aa21.24■□□□□ 0.99
VPS53-201ENST00000291074 ZNF365Q70YC5 407 aa21.24■□□□□ 0.99
VPS53-201ENST00000291074 GLIS1Q8NBF1 620 aa21.24■□□□□ 0.99
VPS53-201ENST00000291074 OPTNQ96CV9 577 aa21.24■□□□□ 0.99
VPS53-201ENST00000291074 SLITRK1Q96PX8 696 aa21.24■□□□□ 0.99
VPS53-201ENST00000291074 CTNNAL1Q9UBT7 734 aa21.24■□□□□ 0.99
VPS53-201ENST00000291074 FOXO6A8MYZ6 492 aa21.24■□□□□ 0.99
VPS53-201ENST00000291074 MEFVO15553 781 aaPredicted RBP21.24■□□□□ 0.99
VPS53-201ENST00000291074 CDH8P55286 799 aa21.24■□□□□ 0.99
VPS53-201ENST00000291074 IFT88Q13099 833 aa21.24■□□□□ 0.99
VPS53-201ENST00000291074 ERMARDQ5T6L9 678 aa21.24■□□□□ 0.99
VPS53-201ENST00000291074 KCNV1Q6PIU1 500 aa21.24■□□□□ 0.99
VPS53-201ENST00000291074 MICALL1Q8N3F8 863 aa21.24■□□□□ 0.99
VPS53-201ENST00000291074 LSM8O95777 96 aaKnown RBP21.23■□□□□ 0.99
VPS53-201ENST00000291074 ITGBL1O95965 494 aaPredicted RBP21.23■□□□□ 0.99
VPS53-201ENST00000291074 TNNC2P02585 160 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 CD19P15391 556 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 ERICH1Q86X53 443 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 ATXN2LQ8WWM7 1075 aaKnown RBP21.23■□□□□ 0.99
VPS53-201ENST00000291074 HAUS1Q96CS2 278 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 TRAIPQ9BWF2 469 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 DNPEPQ9ULA0 475 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 KCNH4Q9UQ05 1017 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 GOLGA8SH3BPF8 625 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 KIAA0754O94854 1291 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 NFICP08651 508 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 SURF1Q15526 300 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 IZUMO3Q5VZ72 239 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 PPP1R2P3Q6NXS1 205 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 GSTA5Q7RTV2 222 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 ANKRD36BP1Q96IX9 119 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 SMARCAD1Q9H4L7 1026 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 EFCC1Q9HA90 598 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 CYTH4Q9UIA0 394 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 SIX4Q9UIU6 781 aa21.23■□□□□ 0.99
VPS53-201ENST00000291074 GPR25O00155 361 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 TFDP1Q14186 410 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 PPP1R15BQ5SWA1 713 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 PPM1EQ8WY54 764 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 FHDC1Q9C0D6 1143 aaPredicted RBP21.22■□□□□ 0.99
VPS53-201ENST00000291074 HOMER3Q9NSC5 361 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 B4GALT4O60513 344 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 ZSCAN5DPP0CG00 497 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 PSMC4P43686 418 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 CDR1P51861 262 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 LACTBP83111 547 aaPredicted RBP21.22■□□□□ 0.99
VPS53-201ENST00000291074 PTPN20Q4JDL3 420 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 TNFAIP8L3Q5GJ75 292 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 OTUD6BQ8N6M0 293 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 SDCBP2Q9H190 292 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 NINJ2Q9NZG7 142 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 TTC4O95801 387 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 ETS1P14921 441 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 CREB1P16220 341 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 DRD4P21917 467 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 KLRC2P26717 231 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 SF3A3Q12874 501 aaKnown RBP eCLIP21.22■□□□□ 0.99
VPS53-201ENST00000291074 PPIL2Q13356 520 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 RNF187Q5TA31 235 aaPredicted RBP21.22■□□□□ 0.99
VPS53-201ENST00000291074 PACS2Q86VP3 889 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 RCOR2Q8IZ40 523 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 HMGXB4Q9UGU5 601 aa21.22■□□□□ 0.99
VPS53-201ENST00000291074 LIASO43766 372 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 HBP1O60381 514 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms