RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 ASB16Q96NS5 453 aa10.52□□□□□ -0.73
VPS41-201ENST00000265745 TMEM209Q96SK2 561 aa10.52□□□□□ -0.73
VPS41-201ENST00000265745 LRRC3Q9BY71 257 aa10.52□□□□□ -0.73
VPS41-201ENST00000265745 DNAJC25Q9H1X3 360 aa10.52□□□□□ -0.73
VPS41-201ENST00000265745 ASAH2Q9NR71 780 aa10.52□□□□□ -0.73
VPS41-201ENST00000265745 HSFX1Q9UBD0 423 aa10.52□□□□□ -0.73
VPS41-201ENST00000265745 SLC27A5Q9Y2P5 690 aa10.52□□□□□ -0.73
VPS41-201ENST00000265745 MTF2Q9Y483 593 aaPredicted RBP10.52□□□□□ -0.73
VPS41-201ENST00000265745 YIPF1Q9Y548 306 aa10.52□□□□□ -0.73
VPS41-201ENST00000265745 PLXNA3P51805 1871 aa10.52□□□□□ -0.73
VPS41-201ENST00000265745 DENND4AQ7Z401 1863 aa10.52□□□□□ -0.73
VPS41-201ENST00000265745 MTMR11A4FU01 709 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 RCCD1A6NED2 376 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 PRR23AA6NEV1 266 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 SHISA7A6NL88 538 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 FAM170BA6NMN3 283 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 CYB561D2O14569 222 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 SPTLC2O15270 562 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 LRRN2O75325 713 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 IL18RAPO95256 599 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 GCNT3O95395 438 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 MYL4P12829 197 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 HOXB3P14651 431 aaPredicted RBP10.51□□□□□ -0.73
VPS41-201ENST00000265745 GJA1P17302 382 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 CD72P21854 359 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 GARTP22102 1010 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 TAF6P49848 677 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 WNT7BP56706 349 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 PLD1Q13393 1074 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 ALCAMQ13740 583 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 STK38Q15208 465 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 WSCD1Q658N2 575 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 NT5DC4Q86YG4 428 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 TMC8Q8IU68 726 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 C1orf210Q8IVY1 113 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 EFCAB13Q8IY85 973 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 PDILTQ8N807 584 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 ZSWIM2Q8NEG5 633 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 SHKBP1Q8TBC3 707 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 NKD2Q969F2 451 aaPredicted RBP10.51□□□□□ -0.73
VPS41-201ENST00000265745 NELL2Q99435 816 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 FAM213AQ9BRX8 229 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 TRMT61BQ9BVS5 477 aaKnown RBP10.51□□□□□ -0.73
VPS41-201ENST00000265745 FGFBP2Q9BYJ0 223 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 OSBPL6Q9BZF3 934 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 GPR88Q9GZN0 384 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 ZCWPW1Q9H0M4 648 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 TRPV4Q9HBA0 871 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 PANK4Q9NVE7 773 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 TFIP11Q9UBB9 837 aaKnown RBP10.51□□□□□ -0.73
VPS41-201ENST00000265745 DSEQ9UL01 958 aa10.51□□□□□ -0.73
VPS41-201ENST00000265745 USP34Q70CQ2 3546 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 C2orf16Q68DN1 1984 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 KPNA7A9QM74 516 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 PPP6R2O75170 966 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 SOAT2O75908 522 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 LDHAP00338 332 aaKnown RBP10.5□□□□□ -0.73
VPS41-201ENST00000265745 PSMC3P17980 439 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 VIPR2P41587 438 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 ALDH1A3P47895 512 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 GRM2Q14416 872 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 UBXN2BQ14CS0 331 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 TEAD2Q15562 447 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 VITQ6UXI7 678 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 ZNF852Q6ZMS4 543 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 TPRG1Q6ZUI0 275 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 DNAJB7Q7Z6W7 309 aaPredicted RBP10.5□□□□□ -0.73
VPS41-201ENST00000265745 LRRTM3Q86VH5 581 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 BRSK2Q8IWQ3 736 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 MAML2Q8IZL2 1156 aaPredicted RBP10.5□□□□□ -0.73
VPS41-201ENST00000265745 SYCP3Q8IZU3 236 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 TTC9BQ8N6N2 239 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 ZSCAN18Q8TBC5 510 aaPredicted RBP10.5□□□□□ -0.73
VPS41-201ENST00000265745 PSMG2Q969U7 264 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 CLDN23Q96B33 292 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 SAAL1Q96ER3 474 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 ZNF396Q96N95 335 aaPredicted RBP10.5□□□□□ -0.73
VPS41-201ENST00000265745 PYM1Q9BRP8 204 aaKnown RBP10.5□□□□□ -0.73
VPS41-201ENST00000265745 CBWD1Q9BRT8 395 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 BCO2Q9BYV7 579 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 TMEM206Q9H813 350 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 LTB4R2Q9NPC1 389 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 TRPV5Q9NQA5 729 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 HEBP1Q9NRV9 189 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 KBTBD4Q9NVX7 518 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 ASB3Q9Y575 518 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 VWA8A3KMH1 1905 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 MYO15AQ9UKN7 3530 aa10.5□□□□□ -0.73
VPS41-201ENST00000265745 DOCK8Q8NF50 2099 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 KMT2EQ8IZD2 1858 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 A0A1W2PRU2 124 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 EXTL3O43909 919 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 PRPF6O94906 941 aaKnown RBP10.49□□□□□ -0.73
VPS41-201ENST00000265745 YEATS4O95619 227 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 PDIA4P13667 645 aaKnown RBP10.49□□□□□ -0.73
VPS41-201ENST00000265745 CD46P15529 392 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 TUFMP49411 452 aaKnown RBP10.49□□□□□ -0.73
VPS41-201ENST00000265745 TFAMQ00059 246 aaKnown RBP10.49□□□□□ -0.73
VPS41-201ENST00000265745 SMARCB1Q12824 385 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 FZD5Q13467 585 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms