RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 USP17L6PQ6QN14 398 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 ZNF589Q86UQ0 364 aaPredicted RBP11.86□□□□□ -0.51
PTPN4-201ENST00000263708 PROM2Q8N271 834 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 RNF149Q8NC42 400 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 TAF1DQ9H5J8 278 aaPredicted RBP11.86□□□□□ -0.51
PTPN4-201ENST00000263708 SH3GLB2Q9NR46 395 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 RNF146Q9NTX7 359 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 RNF112Q9ULX5 631 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 CIAO1O76071 339 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 SFNP31947 248 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 CYP4Z1Q86W10 505 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 CMTM5Q96DZ9 223 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 MCEEQ96PE7 176 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 TMCC3Q9ULS5 477 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 EMSYQ7Z589 1322 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 ZNF518AQ6AHZ1 1483 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 STX4Q12846 297 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 CACHD1Q5VU97 1274 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 RAB6BQ9NRW1 208 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 RNF181Q9P0P0 153 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 CHL1O00533 1208 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 PHKG2P15735 406 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 PSMA4P25789 261 aaKnown RBP11.86□□□□□ -0.51
PTPN4-201ENST00000263708 RSPH1Q8WYR4 309 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 DDX47Q9H0S4 455 aaKnown RBP11.86□□□□□ -0.51
PTPN4-201ENST00000263708 KLHL1Q9NR64 748 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 DYTNA2CJ06 578 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 QARSP47897 775 aaKnown RBP11.86□□□□□ -0.51
PTPN4-201ENST00000263708 SEMA3FQ13275 785 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 TIGD7Q6NT04 549 aaPredicted RBP11.86□□□□□ -0.51
PTPN4-201ENST00000263708 UGT3A1Q6NUS8 523 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 EPHX4Q8IUS5 362 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 CPA5Q8WXQ8 436 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 CHAMP1Q96JM3 812 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 MOV10L1Q9BXT6 1211 aaKnown RBP11.86□□□□□ -0.51
PTPN4-201ENST00000263708 EXO5Q9H790 373 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 ZSWIM5Q9P217 1185 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 RNASEH1O60930 286 aaKnown RBP11.86□□□□□ -0.51
PTPN4-201ENST00000263708 ZSWIM7Q19AV6 140 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 OSGEPL1Q9H4B0 414 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 IQCMA0A1B0GVH7 501 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 SASH1O94885 1247 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 SYTL1Q8IYJ3 562 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 DDI1Q8WTU0 396 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 S100A13Q99584 98 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 ATP6V1B1P15313 513 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 INTS13Q9NVM9 706 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 TLR7Q9NYK1 1049 aaKnown RBP11.86□□□□□ -0.51
PTPN4-201ENST00000263708 SIK3Q9Y2K2 1263 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 TRIM49P0CI25 452 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 TRIM49CP0CI26 452 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 UGP2Q16851 508 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 LEMD2Q8NC56 503 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 FAM135BQ49AJ0 1406 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 VWA5AO00534 786 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 PARNO95453 639 aaKnown RBP11.85□□□□□ -0.51
PTPN4-201ENST00000263708 TNNI3P19429 210 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 NACC2Q96BF6 587 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 GRAMD1AQ96CP6 724 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 SPACA7Q96KW9 195 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 JAK1P23458 1154 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 KCNB1Q14721 858 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 MIIPQ5JXC2 388 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 TYW3Q6IPR3 259 aaKnown RBP11.85□□□□□ -0.51
PTPN4-201ENST00000263708 PDCD10Q9BUL8 212 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 PRAG1Q86YV5 1406 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 LRRC14BA6NHZ5 514 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 LRRC49Q8IUZ0 686 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 NSUN7Q8NE18 718 aaKnown RBP11.85□□□□□ -0.51
PTPN4-201ENST00000263708 RNFT2Q96EX2 444 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 RHBDL2Q9NX52 303 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 CHURC1-FNTBB4DL54 471 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 SNPHO15079 494 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 NUMBP49757 651 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 DAB2IPQ5VWQ8 1189 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 KLHL17Q6TDP4 642 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 KLHL25Q9H0H3 589 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 CLEC4MQ9H2X3 399 aaPredicted RBP11.85□□□□□ -0.51
PTPN4-201ENST00000263708 ASAP1Q9ULH1 1129 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 MAST1Q9Y2H9 1570 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 GNG14A0A1W2PPG7 69 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 UBTFL6P0CB48 400 aaPredicted RBP11.85□□□□□ -0.51
PTPN4-201ENST00000263708 SCARA3Q6AZY7 606 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 ZNF786Q8N393 782 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 SLC30A5Q8TAD4 765 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 MED8Q96G25 268 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 AHCYL2Q96HN2 611 aaKnown RBP11.85□□□□□ -0.51
PTPN4-201ENST00000263708 JPH1Q9HDC5 661 aaPredicted RBP11.85□□□□□ -0.51
PTPN4-201ENST00000263708 ECE2O60344 883 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 GGPS1O95749 300 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 PNMA6AP0CW24 399 aaPredicted RBP11.85□□□□□ -0.51
PTPN4-201ENST00000263708 MRPS35P82673 323 aaKnown RBP11.85□□□□□ -0.51
PTPN4-201ENST00000263708 CAMKK2Q96RR4 588 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 TRMT6Q9UJA5 497 aaKnown RBP11.85□□□□□ -0.51
PTPN4-201ENST00000263708 EDRF1Q3B7T1 1238 aa11.85□□□□□ -0.51
PTPN4-201ENST00000263708 TTC39BQ5VTQ0 682 aaPredicted RBP11.85□□□□□ -0.51
PTPN4-201ENST00000263708 AP3D1O14617 1153 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 CLTBP09497 229 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 RARBP10826 455 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 POLD3Q15054 466 aaPredicted RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms