RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 HIF1AQ16665 826 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 ZBTB41Q5SVQ8 909 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 MFSD5Q6N075 450 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 PPM1NQ8N819 430 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 MAIP1Q8WWC4 291 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 PSPC1Q8WXF1 523 aaKnown RBP12.62□□□□□ -0.39
USHBP1-201ENST00000252597 RNPEPL1Q9HAU8 725 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 TMEM8AQ9HCN3 771 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 GRID1Q9ULK0 1009 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 MAD1L1Q9Y6D9 718 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 H3BRJ5 948 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 GRAP2O75791 330 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 NPR1P16066 1061 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 BGNP21810 368 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 TFAMQ00059 246 aaKnown RBP12.62□□□□□ -0.39
USHBP1-201ENST00000252597 THOC5Q13769 683 aaKnown RBP12.62□□□□□ -0.39
USHBP1-201ENST00000252597 AP1ARQ63HQ0 302 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 RFX6Q8HWS3 928 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 FAM71DQ8N9W8 422 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 PPFIBP2Q8ND30 876 aa12.62□□□□□ -0.39
USHBP1-201ENST00000252597 ZNF75CPQ92670 426 aaPredicted RBP12.62□□□□□ -0.39
USHBP1-201ENST00000252597 TARS2Q9BW92 718 aaKnown RBP12.62□□□□□ -0.39
USHBP1-201ENST00000252597 CALB2P22676 271 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 GTF2H1P32780 548 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 NOVP48745 357 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 HIRAP54198 1017 aaPredicted RBP12.61□□□□□ -0.39
USHBP1-201ENST00000252597 NLRP11P59045 1033 aaKnown RBP12.61□□□□□ -0.39
USHBP1-201ENST00000252597 RPS6P62753 249 aaKnown RBP12.61□□□□□ -0.39
USHBP1-201ENST00000252597 SPP2Q13103 211 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 PTK6Q13882 451 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 MAPK6Q16659 721 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 TKFCQ3LXA3 575 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 CFAP157Q5JU67 520 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.61□□□□□ -0.39
USHBP1-201ENST00000252597 RBBP8NLQ8NC74 664 aaPredicted RBP12.61□□□□□ -0.39
USHBP1-201ENST00000252597 CRYGNQ8WXF5 182 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 CD101Q93033 1021 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 CLPTM1LQ96KA5 538 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 ZNF395Q9H8N7 513 aaPredicted RBP12.61□□□□□ -0.39
USHBP1-201ENST00000252597 PIH1D1Q9NWS0 290 aaKnown RBP12.61□□□□□ -0.39
USHBP1-201ENST00000252597 CCDC160A6NGH7 325 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 CST8O60676 142 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 LPXNO60711 386 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 AVILO75366 819 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 PROSCO94903 275 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 FDX1P10109 184 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 RASIP1Q5U651 963 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 C15orf52Q6ZUT6 534 aaKnown RBP12.61□□□□□ -0.39
USHBP1-201ENST00000252597 TRABD2AQ86V40 505 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 EFCAB3Q8N7B9 438 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 AGR3Q8TD06 166 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 STK32AQ8WU08 396 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 GMCL1Q96IK5 515 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 ZDHHC15Q96MV8 337 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 MECRQ9BV79 373 aa12.61□□□□□ -0.39
USHBP1-201ENST00000252597 CPSF2Q9P2I0 782 aaKnown RBP12.61□□□□□ -0.39
USHBP1-201ENST00000252597 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.6□□□□□ -0.39
USHBP1-201ENST00000252597 INHBAP08476 426 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 CALRP27797 417 aaKnown RBP12.6□□□□□ -0.39
USHBP1-201ENST00000252597 EPHB1P54762 984 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 ALDH18A1P54886 795 aaKnown RBP12.6□□□□□ -0.39
USHBP1-201ENST00000252597 SLC8A3P57103 927 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 BMPR2Q13873 1038 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 PRAMEF18Q5VWM3 479 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 ANKRD22Q5VYY1 191 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 ANKLE1Q8NAG6 615 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 FBXO36Q8NEA4 188 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 TEKT4Q8WW24 435 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 DDX27Q96GQ7 796 aaKnown RBP12.6□□□□□ -0.39
USHBP1-201ENST00000252597 TRIM55Q9BYV6 548 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 CYP4F11Q9HBI6 524 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 PCDHB2Q9Y5E7 798 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 HEY1Q9Y5J3 304 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 NVLO15381 856 aaKnown RBP12.6□□□□□ -0.39
USHBP1-201ENST00000252597 FAM155BO75949 473 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 TJP3O95049 919 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 LUC7L3O95232 432 aaKnown RBP12.6□□□□□ -0.39
USHBP1-201ENST00000252597 ZBTB7AO95365 584 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 RFX1P22670 979 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 IVDP26440 423 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 MARK3P27448 753 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 MAN1A1P33908 653 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 ATXN3P54252 364 aaPredicted RBP12.6□□□□□ -0.39
USHBP1-201ENST00000252597 GPD1LQ8N335 351 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 TMEM130Q8N3G9 435 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 ARL8BQ9NVJ2 186 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 RBAKQ9NYW8 714 aaPredicted RBP12.6□□□□□ -0.39
USHBP1-201ENST00000252597 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.6□□□□□ -0.39
USHBP1-201ENST00000252597 KLRG2A4D1S0 409 aaPredicted RBP12.6□□□□□ -0.39
USHBP1-201ENST00000252597 H7C0C1 242 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 TP73O15350 636 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 SRGAP2CP0DJJ0 459 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 ATP4AP20648 1035 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 PSMA2P25787 234 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 ALDH1B1P30837 517 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 ATP5OP48047 213 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 KLC1Q07866 573 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 RIPK1Q13546 671 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 SNX30Q5VWJ9 437 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 ARMC3Q5W041 872 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms