RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 PDE1BQ01064 536 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 GRIK3Q13003 919 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 LINC00523Q86TU6 105 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 UNC45BQ8IWX7 931 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 GPR20Q99678 358 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 SETD4Q9NVD3 440 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 SH3BP1Q9Y3L3 701 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 GYPCP04921 128 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 IRX4P78413 519 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 UGP2Q16851 508 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 ZNF394Q53GI3 561 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 ATP11CQ8NB49 1132 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 BCORQ6W2J9 1755 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 SEPT4O43236 478 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 RFC2P35250 354 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 SDCCAG8Q86SQ7 713 aaPredicted RBP14.36□□□□□ -0.11
LDLR-201ENST00000252444 CCDC60Q8IWA6 550 aaPredicted RBP14.36□□□□□ -0.11
LDLR-201ENST00000252444 RYBPQ8N488 228 aaPredicted RBP14.36□□□□□ -0.11
LDLR-201ENST00000252444 SLC35G2Q8TBE7 412 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 ARHGEF26Q96DR7 871 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 KIFC3Q9BVG8 833 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 CNTNAP1P78357 1384 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 ARHGAP42A6NI28 874 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 DNAJB2P25686 324 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 CDH6P55285 790 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 ST8SIA6P61647 398 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 ZNF235Q14590 738 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 KIAA0895Q8NCT3 520 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 CLEC4DQ8WXI8 215 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 SMARCD1Q96GM5 515 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 TSPYL2Q9H2G4 693 aaPredicted RBP14.36□□□□□ -0.11
LDLR-201ENST00000252444 TOGARAM1Q9Y4F4 1720 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 BTNL10A8MVZ5 291 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 COL6A1P12109 1028 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 EIF4BP23588 611 aaKnown RBP14.35□□□□□ -0.11
LDLR-201ENST00000252444 ATG16L1Q676U5 607 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 CCDC149Q6ZUS6 474 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 DDX42Q86XP3 938 aaKnown RBP eCLIP14.35□□□□□ -0.11
LDLR-201ENST00000252444 IFNL1Q8IU54 200 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 C4orf32Q8N8J7 132 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 CEP120Q8N960 986 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 LMCD1Q9NZU5 365 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 MAP3K10Q02779 954 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 PASD1Q8IV76 773 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 MRFAP1Q9Y605 127 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 CLUHO75153 1309 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 F8VZ95 297 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 EEF2KO00418 725 aaKnown RBP14.35□□□□□ -0.11
LDLR-201ENST00000252444 STIP1P31948 543 aaKnown RBP14.35□□□□□ -0.11
LDLR-201ENST00000252444 CBX1P83916 185 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 CLEC16AQ2KHT3 1053 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 ZNF662Q6ZS27 426 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 TRMT10CQ7L0Y3 403 aaKnown RBP14.35□□□□□ -0.11
LDLR-201ENST00000252444 RIBC1Q8N443 379 aaPredicted RBP14.35□□□□□ -0.11
LDLR-201ENST00000252444 MRPS31Q92665 395 aaKnown RBP14.35□□□□□ -0.11
LDLR-201ENST00000252444 DHX35Q9H5Z1 703 aaKnown RBP14.35□□□□□ -0.11
LDLR-201ENST00000252444 SERPINB9P50453 376 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 CCZ1BP86790 482 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 CCZ1P86791 482 aaPredicted RBP14.35□□□□□ -0.11
LDLR-201ENST00000252444 PTK7Q13308 1070 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 CDO1Q16878 200 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 CYP4A22Q5TCH4 519 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 CBWD2Q8IUF1 395 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 CALML6Q8TD86 181 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 PTCH2Q9Y6C5 1203 aa14.35□□□□□ -0.11
LDLR-201ENST00000252444 EML1O00423 815 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 MT-ND3P03897 115 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 LCP1P13796 627 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 RAG1P15918 1043 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 KIZQ2M2Z5 673 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 TOP6BLQ8N6T0 577 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 DEPDC1BQ8WUY9 529 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 UCMAQ8WVF2 138 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 SRPK1Q96SB4 655 aaKnown RBP14.34□□□□□ -0.11
LDLR-201ENST00000252444 TRAIPQ9BWF2 469 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 XYLBO75191 536 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 KCNA2P16389 499 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 NOVP48745 357 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 ATPAF2Q8N5M1 289 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 LZTR1Q8N653 840 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 DNAJB3Q8WWF6 145 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 MAML3Q96JK9 1138 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 KCND1Q9NSA2 647 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 TRPM5Q9NZQ8 1165 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 GOLGA8MH3BSY2 632 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 KDM1AO60341 852 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 SLC9A1P19634 815 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 GLRA2P23416 452 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 PRKCIP41743 596 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 PPP6R3Q5H9R7 873 aaPredicted RBP14.34□□□□□ -0.11
LDLR-201ENST00000252444 LRIG3Q6UXM1 1119 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 YME1L1Q96TA2 773 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 CNPY3Q9BT09 278 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 CYLDQ9NQC7 956 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 KLHL14Q9P2G3 628 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 VTNP04004 478 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 CYP11B1P15538 503 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 ZNF131P52739 623 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 AIF1P55008 147 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 BSPRYQ5W0U4 402 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms