RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 SPOCD1Q6ZMY3 1216 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 FAM47EQ6ZV65 393 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 KCNN1Q92952 543 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 CXorf56Q9H5V9 222 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 DHX33Q9H6R0 707 aaKnown RBP19.77■□□□□ 0.76
CPSF3-201ENST00000238112 ACAD9Q9H845 621 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 VPS37BQ9H9H4 285 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 AS3MTQ9HBK9 375 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 ZNF214Q9UL59 606 aaPredicted RBP19.77■□□□□ 0.76
CPSF3-201ENST00000238112 KIAA1217Q5T5P2 1943 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 A0A1B0GUA9 196 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 ATP2A1O14983 1001 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 SPAG7O75391 227 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 EGFRP00533 1210 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 DPEP1P16444 411 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 KRT15P19012 456 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 ARL2P36404 184 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 ACVR2BQ13705 512 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 MORF4L2Q15014 288 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 SEZ6Q53EL9 994 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 TDRPQ86YL5 185 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 F8VP50 259 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 HGSO14964 777 aaPredicted RBP19.76■□□□□ 0.75
CPSF3-201ENST00000238112 LSM8O95777 96 aaKnown RBP19.76■□□□□ 0.75
CPSF3-201ENST00000238112 ETS1P14921 441 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 ATP4AP20648 1035 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 ZNF132P52740 706 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 WDR4P57081 412 aaKnown RBP19.76■□□□□ 0.75
CPSF3-201ENST00000238112 HP1BP3Q5SSJ5 553 aaPredicted RBP19.76■□□□□ 0.75
CPSF3-201ENST00000238112 KIF2BQ8N4N8 673 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 ZNF280CQ8ND82 737 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 HAUS1Q96CS2 278 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 SMC6Q96SB8 1091 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 TRABDQ9H4I3 376 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 DRG1Q9Y295 367 aaKnown RBP19.76■□□□□ 0.75
CPSF3-201ENST00000238112 MAFBQ9Y5Q3 323 aaPredicted RBP19.76■□□□□ 0.75
CPSF3-201ENST00000238112 NDC80O14777 642 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 GCAP28676 217 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 VCPP55072 806 aaKnown RBP19.76■□□□□ 0.75
CPSF3-201ENST00000238112 PLCB3Q01970 1234 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 ZNF252P-AS1Q0IIN9 211 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 SPARCL1Q14515 664 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 TMEM132BQ14DG7 1078 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 TFDP3Q5H9I0 405 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 CAPN12Q6ZSI9 719 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 CENPUQ71F23 418 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 TMEM35BQ8NCS4 154 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 FBF1Q8TES7 1133 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 TEX13BQ9BXU2 312 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 ARHGEF3Q9NR81 526 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 SENP1Q9P0U3 644 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 ADGRA2Q96PE1 1338 aa19.76■□□□□ 0.75
CPSF3-201ENST00000238112 LRRD1A4D1F6 860 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 PRPF4O43172 522 aaKnown RBP eCLIP19.75■□□□□ 0.75
CPSF3-201ENST00000238112 ASMTLO95671 621 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 HMGCS2P54868 508 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 SP2Q02086 613 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 CCDC15Q0P6D6 951 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 PIGHQ14442 188 aaPredicted RBP19.75■□□□□ 0.75
CPSF3-201ENST00000238112 FASTKD3Q14CZ7 662 aaKnown RBP19.75■□□□□ 0.75
CPSF3-201ENST00000238112 ECHDC2Q86YB7 292 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 ZBED8Q8IZ13 594 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 SCYL3Q8IZE3 742 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 ZNF526Q8TF50 670 aaPredicted RBP19.75■□□□□ 0.75
CPSF3-201ENST00000238112 PICK1Q9NRD5 415 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 DDX56Q9NY93 547 aaKnown RBP19.75■□□□□ 0.75
CPSF3-201ENST00000238112 SMG5Q9UPR3 1016 aaKnown RBP19.75■□□□□ 0.75
CPSF3-201ENST00000238112 STK38LQ9Y2H1 464 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 DOCK5Q9H7D0 1870 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 hCG_1818297A0A087WSY0 165 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 SGK1O00141 431 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 IFNB1P01574 187 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 KCNA3P22001 575 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 BRD2P25440 801 aaKnown RBP19.75■□□□□ 0.75
CPSF3-201ENST00000238112 ELF1P32519 619 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 AP3M2P53677 418 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 TGFB2P61812 414 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 TAP1Q03518 808 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 MGAT5Q09328 741 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 JDP2Q8WYK2 163 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 N4BP2L2Q92802 583 aaPredicted RBP19.75■□□□□ 0.75
CPSF3-201ENST00000238112 TMEM134Q9H6X4 195 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 SHOC2Q9UQ13 582 aa19.75■□□□□ 0.75
CPSF3-201ENST00000238112 ASS1P00966 412 aaKnown RBP19.74■□□□□ 0.75
CPSF3-201ENST00000238112 EDN1P05305 212 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 KRT16P08779 473 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 PTPN7P35236 360 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 SKIV2L2P42285 1042 aaKnown RBP19.74■□□□□ 0.75
CPSF3-201ENST00000238112 DNAJC3Q13217 504 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 NBPF12Q5TAG4 269 aaPredicted RBP19.74■□□□□ 0.75
CPSF3-201ENST00000238112 DCAF15Q66K64 600 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 UBR7Q8N806 425 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 ACSF2Q96CM8 615 aaPredicted RBP19.74■□□□□ 0.75
CPSF3-201ENST00000238112 STARD13Q9Y3M8 1113 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 CST3P01034 146 aaPredicted RBP19.74■□□□□ 0.75
CPSF3-201ENST00000238112 ITGAVP06756 1048 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 ALADP13716 330 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 OGDHQ02218 1023 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 SETDB1Q15047 1291 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 OASLQ15646 514 aaKnown RBP19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms