RNA–Protein interactions for RNA: ENST00000023939.8

RTFDC1-201, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-201ENST00000023939 NOGQ13253 232 aa15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 SMC1AQ14683 1233 aaKnown RBP15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 CYP1B1Q16678 543 aa15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 ZNF394Q53GI3 561 aa15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 UBXN11Q5T124 520 aa15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 SLC13A5Q86YT5 568 aaPredicted RBP15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 C1orf131Q8NDD1 294 aaKnown RBP15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 TMEM176AQ96HP8 235 aa15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 TRIM7Q9C029 511 aa15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 ARHGAP39Q9C0H5 1083 aa15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 ELOVL4Q9GZR5 314 aa15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 SPC25Q9HBM1 224 aa15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 IP6K2Q9UHH9 426 aa15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 STRIP2Q9ULQ0 834 aa15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 BARX2Q9UMQ3 279 aaPredicted RBP15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 GABRQQ9UN88 632 aa15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.2■□□□□ 0.02
RTFDC1-201ENST00000023939 CITO14578 2027 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 PSTPIP1O43586 416 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 VDRP11473 427 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 KCNE1P15382 129 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 RAP1GAPP47736 663 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 AARSP49588 968 aaKnown RBP eCLIP15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 GUCY2FP51841 1108 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 CDH8P55286 799 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 GPS2Q13227 327 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 CNGA2Q16280 664 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 GNASQ5JWF2 1037 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 PPP1R15BQ5SWA1 713 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 DENND1BQ6P3S1 775 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 RPAINQ86UA6 219 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 ERICH1Q86X53 443 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 CPNE8Q86YQ8 564 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 BEST2Q8NFU1 509 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 CASKIN2Q8WXE0 1202 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 ZMAT2Q96NC0 199 aaKnown RBP15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 RUNDC3BQ96NL0 473 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 CELF4Q9BZC1 486 aaKnown RBP15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 GTF2IRD1Q9UHL9 959 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 UBQLN1Q9UMX0 589 aaKnown RBP15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 NR2E1Q9Y466 385 aa15.19■□□□□ 0.02
RTFDC1-201ENST00000023939 SCN10AQ9Y5Y9 1956 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 A0A0U1RQG5 324 aaPredicted RBP15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 FAM187AA6NFU0 413 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 FSCN2O14926 492 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 TLR3O15455 904 aaKnown RBP15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 PHF2O75151 1096 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 RECQL4O94761 1208 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 HMGCRP04035 888 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 CD19P15391 556 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 CHRNA3P32297 505 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 CARSP49589 748 aaKnown RBP15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 DHX34Q14147 1143 aaKnown RBP15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 C2CD6Q53TS8 623 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 LLGL2Q6P1M3 1020 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 SESTD1Q86VW0 696 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 GSPT2Q8IYD1 628 aaKnown RBP15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 PRELID2Q8N945 189 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 C3orf20Q8ND61 904 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 PPP1R13LQ8WUF5 828 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 DDX27Q96GQ7 796 aaKnown RBP15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 TWNKQ96RR1 684 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 TRIM6Q9C030 488 aaPredicted RBP15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 GPBP1L1Q9HC44 474 aaPredicted RBP15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 MTUS1Q9ULD2 1270 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 HPCAL4Q9UM19 191 aa15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 PIN4Q9Y237 131 aaKnown RBP15.18■□□□□ 0.02
RTFDC1-201ENST00000023939 CD4P01730 458 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 RARBP10826 455 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 SSTR3P32745 418 aaPredicted RBP15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 TNNT3P45378 269 aaPredicted RBP15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 MRPS6P82932 125 aaKnown RBP15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 STILQ15468 1287 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 LRRC38Q5VT99 294 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 DNAJC24Q6P3W2 148 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 RHOT1Q8IXI2 618 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 MREGQ8N565 214 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 NIPA2Q8N8Q9 360 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 C12orf50Q8NA57 414 aaPredicted RBP15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 MAIP1Q8WWC4 291 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 CFHR5Q9BXR6 569 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 NXF3Q9H4D5 531 aaKnown RBP15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 WDR35Q9P2L0 1181 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 PCYOX1Q9UHG3 505 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 AMACRQ9UHK6 382 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 CASP8AP2Q9UKL3 1982 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 ZSCAN5CA6NGD5 496 aaPredicted RBP15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 O00370 1275 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 XPOTO43592 962 aaKnown RBP15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 ADAMTS4O75173 837 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 CYP3A5P20815 502 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 CST5P28325 142 aaPredicted RBP15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 PRKCZQ05513 592 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 SIX1Q15475 284 aaPredicted RBP15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 NBPF20Q3BBV1 942 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 CYP4F22Q6NT55 531 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 AADACL2Q6P093 401 aa15.17■□□□□ 0.02
RTFDC1-201ENST00000023939 SND1Q7KZF4 910 aaKnown RBP eCLIP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms