RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 H3BNX3 289 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 CAPN15O75808 1086 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 ABL1P00519 1130 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 DCAF6Q58WW2 860 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 S100ZQ8WXG8 99 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 POLG2Q9UHN1 485 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 SQORQ9Y6N5 450 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 SVILO95425 2214 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 CNOT3O75175 753 aaKnown RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 ZNF24P17028 368 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 QARSP47897 775 aaKnown RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 BHLHB9Q6PI77 547 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 GPT2Q8TD30 523 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 C18orf8Q96DM3 657 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 FAM124BQ9H5Z6 455 aaPredicted RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 NCKIPSDQ9NZQ3 722 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 CNOT8Q9UFF9 292 aaKnown RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 FAM47E-STBD1D6RA91 191 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 CFLARO15519 480 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 LSM8O95777 96 aaKnown RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 RFC5P40937 340 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 POLA2Q14181 598 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 PDK2Q15119 407 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 FAM83BQ5T0W9 1011 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 TTC33Q6PID6 262 aaPredicted RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 RGS9BPQ6ZS82 235 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 THNSL1Q8IYQ7 743 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 PPRC1Q5VV67 1664 aaKnown RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 PSMD12O00232 456 aaPredicted RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 SNRPAP09012 282 aaKnown RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 PLA2G4AP47712 749 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 NPY2RP49146 381 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 COA7Q96BR5 231 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 OXCT2Q9BYC2 517 aaPredicted RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 TIMMDC1Q9NPL8 285 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 SAP30BPQ9UHR5 308 aaKnown RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 EFR3BQ9Y2G0 817 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 A0A0B4J269 797 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 C2orf81A6NN90 581 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 H0YJX3 145 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 COPZ1P61923 177 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 TIMM10P62072 90 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 TUBB3Q13509 450 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 PFKFB3Q16875 520 aaPredicted RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 DPCR1Q3MIW9 517 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 NAA35Q5VZE5 725 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 RWDD4Q6NW29 188 aaKnown RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 FAM196AQ6ZSG2 479 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 FAM161BQ96MY7 647 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 PDCD10Q9BUL8 212 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 ANKRD6Q9Y2G4 727 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 DDX39AO00148 427 aaKnown RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 GUCY1B2O75343 617 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 PALMO75781 387 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 VAMP7P51809 220 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 HNRNPH2P55795 449 aaKnown RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 ZNF568Q3ZCX4 644 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 FASTKD1Q53R41 847 aaKnown RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 TTC27Q6P3X3 843 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 FBXO38Q6PIJ6 1188 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 ZDHHC17Q8IUH5 632 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 CHCHD6Q9BRQ6 235 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 TMCC3Q9ULS5 477 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 RBP1P09455 135 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 CCDC33Q8N5R6 958 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 SPATA4Q8NEY3 305 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 ZNF512BQ96KM6 892 aaPredicted RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 RNPC3Q96LT9 517 aaKnown RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 BARHL2Q9NY43 387 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 KLHL3Q9UH77 587 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 KCNJ14Q9UNX9 436 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 ADGRB3O60242 1522 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 ALAS1P13196 640 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 ZNF18P17022 549 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 NPR3P17342 541 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 CAPZA2P47755 286 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 EIF4A1P60842 406 aaKnown RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 PSMC5P62195 406 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 PDAP1Q13442 181 aaKnown RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 ZNF438Q7Z4V0 828 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 ATPAF2Q8N5M1 289 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 B4GALNT2Q8NHY0 566 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 PGBD4Q96DM1 585 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 KLHL4Q9C0H6 718 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 VAV3Q9UKW4 847 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 SPATA31E1Q6ZUB1 1445 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 CBFA2T3O75081 653 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 THRAP10827 490 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 GPC3P51654 580 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 FAM189A2Q15884 450 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 CCDC142Q17RM4 750 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 BBS9Q3SYG4 887 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 DNAJB7Q7Z6W7 309 aaPredicted RBP6.33□□□□□ -1.4
VPS13D-201ENST00000011700 ERO1BQ86YB8 467 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 STAG2Q8N3U4 1231 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 MAGEC3Q8TD91 643 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 AAASQ9NRG9 546 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 SNX12Q9UMY4 172 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 PCDHB2Q9Y5E7 798 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 TMEM2Q9UHN6 1383 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms