RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 LIASO43766 372 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 HMGCS2P54868 508 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 NFX1Q12986 1120 aaKnown RBP11.31□□□□□ -0.6
USP28-201ENST00000003302 ATL2Q8NHH9 583 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 SERPINB12Q96P63 405 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 MOV10L1Q9BXT6 1211 aaKnown RBP11.31□□□□□ -0.6
USP28-201ENST00000003302 ZWILCHQ9H900 591 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 RNF146Q9NTX7 359 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 CNTNAP2Q9UHC6 1331 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 EXOC1LA0A1B0GW35 172 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 ITIH2P19823 946 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 MARK3P27448 753 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 RFC1P35251 1148 aaPredicted RBP11.31□□□□□ -0.6
USP28-201ENST00000003302 MSH2P43246 934 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 MYL6P60660 151 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 ACTR2P61160 394 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 NEDD9Q14511 834 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 TMEM132BQ14DG7 1078 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 TRMT10CQ7L0Y3 403 aaKnown RBP11.31□□□□□ -0.6
USP28-201ENST00000003302 C3orf20Q8ND61 904 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 SLCO2A1Q92959 643 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 TRAIPQ9BWF2 469 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 PITPNM3Q9BZ71 974 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 METTL5Q9NRN9 209 aaKnown RBP11.31□□□□□ -0.6
USP28-201ENST00000003302 F5H423 210 aaPredicted RBP11.3□□□□□ -0.6
USP28-201ENST00000003302 MOGSQ13724 837 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 BRDTQ58F21 947 aaPredicted RBP11.3□□□□□ -0.6
USP28-201ENST00000003302 VSIG10LQ86VR7 867 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 OGFOD1Q8N543 542 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 TTLL6Q8N841 843 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 SLITRK1Q96PX8 696 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 TWNKQ96RR1 684 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 ST6GALNAC4Q9H4F1 302 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 EBF2Q9HAK2 575 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 CYP26B1Q9NR63 512 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 C1orf112Q9NSG2 853 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 PCSK1NQ9UHG2 260 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 PHTF1Q9UMS5 762 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 PCDHA10Q9Y5I2 948 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 RDXP35241 583 aaKnown RBP11.3□□□□□ -0.6
USP28-201ENST00000003302 FAXCQ5TGI0 409 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 SNRNP48Q6IEG0 339 aaKnown RBP11.3□□□□□ -0.6
USP28-201ENST00000003302 CDHR3Q6ZTQ4 885 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 MIEF2Q96C03 454 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 FAXDC2Q96IV6 333 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 NPHS2Q9NP85 383 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 RBAKQ9NYW8 714 aaPredicted RBP11.3□□□□□ -0.6
USP28-201ENST00000003302 POLIQ9UNA4 740 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 PCDHB2Q9Y5E7 798 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 P4HA2O15460 535 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 KRT4P19013 534 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 CUL2Q13617 745 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 SPDYCQ5MJ68 293 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 OTOAQ7RTW8 1153 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 UNC45BQ8IWX7 931 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 LRRC71Q8N4P6 559 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 NTPCRQ9BSD7 190 aaKnown RBP11.3□□□□□ -0.6
USP28-201ENST00000003302 ZNF214Q9UL59 606 aaPredicted RBP11.3□□□□□ -0.6
USP28-201ENST00000003302 AFG3L2Q9Y4W6 797 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 MCM3APO60318 1980 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 B4GALT5O43286 388 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 RFX1P22670 979 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 GCNT1Q02742 428 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 NAA25Q14CX7 972 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 ZNF365Q70YC5 407 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 ABRAQ8N0Z2 381 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 VPS37BQ9H9H4 285 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 TMOD2Q9NZR1 351 aa11.3□□□□□ -0.6
USP28-201ENST00000003302 AGO2Q9UKV8 859 aaKnown RBP11.3□□□□□ -0.6
USP28-201ENST00000003302 TCRBV5S1A1TA0A578 114 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 UGT1A9O60656 530 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 EN1Q05925 392 aaPredicted RBP11.29□□□□□ -0.6
USP28-201ENST00000003302 MYBPC2Q14324 1141 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 MTFR1Q15390 333 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 TRNP1Q6NT89 227 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 LRRC6Q86X45 466 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 PCYT2Q99447 389 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 MECRQ9BV79 373 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 UGT1A7Q9HAW7 530 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 UGT1A10Q9HAW8 530 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 UGT1A8Q9HAW9 530 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 HOMER3Q9NSC5 361 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 SLC17A6Q9P2U8 582 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 LRRD1A4D1F6 860 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 GRAP2O75791 330 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 LYPLA2O95372 231 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 ASNSP08243 561 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 LIG4P49917 911 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 PLCB3Q01970 1234 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 PDIA2Q13087 525 aaKnown RBP11.29□□□□□ -0.6
USP28-201ENST00000003302 DSTYKQ6XUX3 929 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 PIH1D1Q9NWS0 290 aaKnown RBP11.29□□□□□ -0.6
USP28-201ENST00000003302 C15orf41Q9Y2V0 281 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 C3orf70A6NLC5 250 aaPredicted RBP11.29□□□□□ -0.6
USP28-201ENST00000003302 OASLQ15646 514 aaKnown RBP11.29□□□□□ -0.6
USP28-201ENST00000003302 HSF5Q4G112 596 aaPredicted RBP11.29□□□□□ -0.6
USP28-201ENST00000003302 PLEKHA7Q6IQ23 1121 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 PRPF39Q86UA1 669 aaKnown RBP11.29□□□□□ -0.6
USP28-201ENST00000003302 TRABDQ9H4I3 376 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 ZNF638Q14966 1978 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms