RNA–Protein interactions for RNA: ENST00000641847.1

PHGDH-228, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 692 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-228ENST00000641847 CPSF3Q9UKF6 684 aaKnown RBP10.16□□□□□ -0.78
PHGDH-228ENST00000641847 IPPQ9Y573 584 aa10.16□□□□□ -0.78
PHGDH-228ENST00000641847 PCDHB2Q9Y5E7 798 aa10.16□□□□□ -0.78
PHGDH-228ENST00000641847 ANK1P16157 1881 aa10.16□□□□□ -0.78
PHGDH-228ENST00000641847 MYO10Q9HD67 2058 aa10.16□□□□□ -0.78
PHGDH-228ENST00000641847 PKD1L2Q7Z442 2459 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 CARNS1A5YM72 827 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 LRRIQ3A6PVS8 624 aaPredicted RBP10.15□□□□□ -0.78
PHGDH-228ENST00000641847 AP5Z1O43299 807 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 CLASP2O75122 1294 aaKnown RBP10.15□□□□□ -0.78
PHGDH-228ENST00000641847 RECQL4O94761 1208 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 CXCL14O95715 111 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 CLTAP09496 248 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 SP9P0CG40 484 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 TRIM49P0CI25 452 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 TRIM49CP0CI26 452 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 ALDH7A1P49419 539 aaKnown RBP10.15□□□□□ -0.78
PHGDH-228ENST00000641847 RAB27AP51159 221 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 VAMP7P51809 220 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 ATXN1P54253 815 aaKnown RBP10.15□□□□□ -0.78
PHGDH-228ENST00000641847 DMWDQ09019 674 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 PSMD6Q15008 389 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 FILIP1LQ4L180 1135 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 VARS2Q5ST30 1063 aaKnown RBP10.15□□□□□ -0.78
PHGDH-228ENST00000641847 PPFIBP1Q86W92 1011 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 HACE1Q8IYU2 909 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 SMG8Q8ND04 991 aaKnown RBP10.15□□□□□ -0.78
PHGDH-228ENST00000641847 PLEKHO2Q8TD55 490 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 CCDC127Q96BQ5 260 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 FAM212AQ96EL1 285 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 ACAP3Q96P50 834 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 TUBGCP2Q9BSJ2 902 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 RTKNQ9BST9 563 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 VPS16Q9H269 839 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 CWH43Q9H720 699 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 ELAC1Q9H777 363 aaKnown RBP10.15□□□□□ -0.78
PHGDH-228ENST00000641847 MMRN2Q9H8L6 949 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 RPF1Q9H9Y2 349 aaKnown RBP10.15□□□□□ -0.78
PHGDH-228ENST00000641847 KCNK12Q9HB15 430 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 SNTG2Q9NY99 539 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 IFNKQ9P0W0 207 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 SIT1Q9Y3P8 196 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 HES2Q9Y543 173 aa10.15□□□□□ -0.78
PHGDH-228ENST00000641847 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.15□□□□□ -0.78
PHGDH-228ENST00000641847 MAP1BP46821 2468 aaKnown RBP10.15□□□□□ -0.78
PHGDH-228ENST00000641847 ASPMQ8IZT6 3477 aa10.15□□□□□ -0.79
PHGDH-228ENST00000641847 A0A1B0GTH6 734 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 LGALS16A8MUM7 142 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 PES1O00541 588 aaKnown RBP10.14□□□□□ -0.79
PHGDH-228ENST00000641847 SPTLC1O15269 473 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 MEFVO15553 781 aaPredicted RBP10.14□□□□□ -0.79
PHGDH-228ENST00000641847 CBFA2T2O43439 604 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 IL18RAPO95256 599 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 AFPP02771 609 aaKnown RBP10.14□□□□□ -0.79
PHGDH-228ENST00000641847 DLATP10515 647 aaKnown RBP10.14□□□□□ -0.79
PHGDH-228ENST00000641847 AKAP5P24588 427 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 YARSP54577 528 aaKnown RBP10.14□□□□□ -0.79
PHGDH-228ENST00000641847 WNT7BP56706 349 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 UBASH3AP57075 661 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 DLG4P78352 724 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 PPP2R3AQ06190 1150 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 ENPEPQ07075 957 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 VWA3BQ502W6 1294 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 MIIPQ5JXC2 388 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 ELMSAN1Q6PJG2 1045 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 TMC5Q6UXY8 1006 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 USP37Q86T82 979 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 C12orf76Q8N812 135 aaPredicted RBP10.14□□□□□ -0.79
PHGDH-228ENST00000641847 TMC2Q8TDI7 906 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 ATRIPQ8WXE1 791 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 SLC35C1Q96A29 364 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 TMEM169Q96HH4 297 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 FNBP1Q96RU3 617 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 CGRRF1Q99675 332 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 TRAIPQ9BWF2 469 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 TRIM5Q9C035 493 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 XPO4Q9C0E2 1151 aaKnown RBP10.14□□□□□ -0.79
PHGDH-228ENST00000641847 RNF39Q9H2S5 420 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 SFXN1Q9H9B4 322 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 PDE11AQ9HCR9 933 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 TOPORSQ9NS56 1045 aaPredicted RBP10.14□□□□□ -0.79
PHGDH-228ENST00000641847 PDCD11Q14690 1871 aaKnown RBP10.14□□□□□ -0.79
PHGDH-228ENST00000641847 CITO14578 2027 aa10.14□□□□□ -0.79
PHGDH-228ENST00000641847 PTPRJQ12913 1337 aa10.13□□□□□ -0.79
PHGDH-228ENST00000641847 USP24Q9UPU5 2620 aa10.13□□□□□ -0.79
PHGDH-228ENST00000641847 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.13□□□□□ -0.79
PHGDH-228ENST00000641847 LRRC10BA6NIK2 292 aa10.13□□□□□ -0.79
PHGDH-228ENST00000641847 C9IYK1 514 aa10.13□□□□□ -0.79
PHGDH-228ENST00000641847 STX10O60499 249 aa10.13□□□□□ -0.79
PHGDH-228ENST00000641847 TPM3P06753 285 aa10.13□□□□□ -0.79
PHGDH-228ENST00000641847 CFHP08603 1231 aa10.13□□□□□ -0.79
PHGDH-228ENST00000641847 FGFR1P11362 822 aa10.13□□□□□ -0.79
PHGDH-228ENST00000641847 SKIP12755 728 aa10.13□□□□□ -0.79
PHGDH-228ENST00000641847 ITGA4P13612 1032 aa10.13□□□□□ -0.79
PHGDH-228ENST00000641847 ZNF75DP51815 510 aa10.13□□□□□ -0.79
PHGDH-228ENST00000641847 MYL7Q01449 175 aa10.13□□□□□ -0.79
PHGDH-228ENST00000641847 POU5F1Q01860 360 aaKnown RBP10.13□□□□□ -0.79
PHGDH-228ENST00000641847 KCNH2Q12809 1159 aa10.13□□□□□ -0.79
PHGDH-228ENST00000641847 SURF1Q15526 300 aa10.13□□□□□ -0.79
PHGDH-228ENST00000641847 C1orf220Q5T0J3 134 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms