RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 LOC105378220A0A1B0GUY1 285 aaPredicted RBP21.11■□□□□ 0.97
CLN3-262ENST00000637699 CLTAP09496 248 aa21.11■□□□□ 0.97
CLN3-262ENST00000637699 U2AF2P26368 475 aaKnown RBP eCLIP21.11■□□□□ 0.97
CLN3-262ENST00000637699 LRPAP1P30533 357 aa21.11■□□□□ 0.97
CLN3-262ENST00000637699 ALDH1A3P47895 512 aa21.11■□□□□ 0.97
CLN3-262ENST00000637699 GUCY2FP51841 1108 aa21.11■□□□□ 0.97
CLN3-262ENST00000637699 MLLT6P55198 1093 aaPredicted RBP21.11■□□□□ 0.97
CLN3-262ENST00000637699 FCHO2Q0JRZ9 810 aa21.11■□□□□ 0.97
CLN3-262ENST00000637699 GPR17Q13304 367 aa21.11■□□□□ 0.97
CLN3-262ENST00000637699 Q6ZS52 159 aa21.11■□□□□ 0.97
CLN3-262ENST00000637699 BICD1Q96G01 975 aa21.11■□□□□ 0.97
CLN3-262ENST00000637699 MSANTD3Q96H12 275 aa21.11■□□□□ 0.97
CLN3-262ENST00000637699 PLIN2Q99541 437 aa21.11■□□□□ 0.97
CLN3-262ENST00000637699 OXCT2Q9BYC2 517 aaPredicted RBP21.11■□□□□ 0.97
CLN3-262ENST00000637699 C8orf33Q9H7E9 229 aaPredicted RBP21.11■□□□□ 0.97
CLN3-262ENST00000637699 SEMA4GQ9NTN9 838 aa21.11■□□□□ 0.97
CLN3-262ENST00000637699 KCNG1Q9UIX4 513 aa21.11■□□□□ 0.97
CLN3-262ENST00000637699 TTC26A0AVF1 554 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 OR6C75A6NL08 312 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 SPECC1L-ADORA2AF8WAN1 911 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 LAD1O00515 517 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 SOAT2O75908 522 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 SEC24BO95487 1268 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 TNFSF9P41273 254 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 ZBTB6Q15916 424 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 WDR44Q5JSH3 913 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 CENPPQ6IPU0 288 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 C1orf228Q6PIY5 440 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 TXNDC11Q6PKC3 985 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.1■□□□□ 0.97
CLN3-262ENST00000637699 ATAD1Q8NBU5 361 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 NETO1Q8TDF5 533 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 ZFYVE19Q96K21 471 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 LRRC3BQ96PB8 259 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 ATXN3LQ9H3M9 355 aa21.1■□□□□ 0.97
CLN3-262ENST00000637699 UBQLN1Q9UMX0 589 aaKnown RBP21.1■□□□□ 0.97
CLN3-262ENST00000637699 KMT2BQ9UMN6 2715 aaPredicted RBP21.09■□□□□ 0.97
CLN3-262ENST00000637699 NPHP3-ACAD11A0A0J9YXS1 232 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 LACTBL1A8MY62 500 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 K7ESF4 209 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 DPYSL4O14531 572 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 SLC30A4O14863 429 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 LRP3O75074 770 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 PRPHP41219 470 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 AARSP49588 968 aaKnown RBP eCLIP21.09■□□□□ 0.97
CLN3-262ENST00000637699 CACNB1Q02641 598 aaPredicted RBP21.09■□□□□ 0.97
CLN3-262ENST00000637699 PPP2R3AQ06190 1150 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 OVOS1Q6IE37 1185 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 GAREM2Q75VX8 874 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 DNAJB7Q7Z6W7 309 aaPredicted RBP21.09■□□□□ 0.97
CLN3-262ENST00000637699 LONP2Q86WA8 852 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 TTC9BQ8N6N2 239 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 FAM200AQ8TCP9 573 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 PNMA5Q96PV4 448 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 C2orf42Q9NWW7 574 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 GTSE1Q9NYZ3 720 aa21.09■□□□□ 0.97
CLN3-262ENST00000637699 MYH11P35749 1972 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 MYBPHLA2RUH7 354 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 MTMR11A4FU01 709 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 PPEF2O14830 753 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 ADRB1P08588 477 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 CYP3A5P20815 502 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 HOXC13P31276 330 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 CTHP32929 405 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 CDR1P51861 262 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 PON2Q15165 354 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 PPM1JQ5JR12 505 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 DGKKQ5KSL6 1271 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 GPR158Q5T848 1215 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 PRR23CQ6ZRP0 262 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 RALGPS2Q86X27 583 aaPredicted RBP21.08■□□□□ 0.97
CLN3-262ENST00000637699 SYT2Q8N9I0 419 aaPredicted RBP21.08■□□□□ 0.97
CLN3-262ENST00000637699 ZSCAN31Q96LW9 406 aaPredicted RBP21.08■□□□□ 0.97
CLN3-262ENST00000637699 TMEM209Q96SK2 561 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 MKNK1Q9BUB5 465 aa21.08■□□□□ 0.97
CLN3-262ENST00000637699 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.08■□□□□ 0.97
CLN3-262ENST00000637699 XPOTO43592 962 aaKnown RBP21.07■□□□□ 0.96
CLN3-262ENST00000637699 GDF9O60383 454 aa21.07■□□□□ 0.96
CLN3-262ENST00000637699 GABRR2P28476 465 aa21.07■□□□□ 0.96
CLN3-262ENST00000637699 CNR2P34972 360 aa21.07■□□□□ 0.96
CLN3-262ENST00000637699 SLC12A3P55017 1021 aa21.07■□□□□ 0.96
CLN3-262ENST00000637699 MYBPC2Q14324 1141 aa21.07■□□□□ 0.96
CLN3-262ENST00000637699 CSRP2Q16527 193 aa21.07■□□□□ 0.96
CLN3-262ENST00000637699 ARHGAP29Q52LW3 1261 aa21.07■□□□□ 0.96
CLN3-262ENST00000637699 ARMCX5Q6P1M9 558 aa21.07■□□□□ 0.96
CLN3-262ENST00000637699 CEP68Q76N32 757 aa21.07■□□□□ 0.96
CLN3-262ENST00000637699 HAUS6Q7Z4H7 955 aa21.07■□□□□ 0.96
CLN3-262ENST00000637699 PSMG2Q969U7 264 aa21.07■□□□□ 0.96
CLN3-262ENST00000637699 FAM212AQ96EL1 285 aa21.07■□□□□ 0.96
CLN3-262ENST00000637699 ASB3Q9Y575 518 aa21.07■□□□□ 0.96
CLN3-262ENST00000637699 RALGAPA1Q6GYQ0 2036 aa21.07■□□□□ 0.96
CLN3-262ENST00000637699 EIF5BO60841 1220 aaKnown RBP21.06■□□□□ 0.96
CLN3-262ENST00000637699 PAPSS2O95340 614 aaPredicted RBP21.06■□□□□ 0.96
CLN3-262ENST00000637699 PLA2G4BP0C869 781 aa21.06■□□□□ 0.96
CLN3-262ENST00000637699 TYMPP19971 482 aa21.06■□□□□ 0.96
CLN3-262ENST00000637699 LIG4P49917 911 aa21.06■□□□□ 0.96
CLN3-262ENST00000637699 ENOX2Q16206 610 aaKnown RBP21.06■□□□□ 0.96
CLN3-262ENST00000637699 ARHGAP15Q53QZ3 475 aa21.06■□□□□ 0.96
CLN3-262ENST00000637699 HYIQ5T013 277 aa21.06■□□□□ 0.96
CLN3-262ENST00000637699 CDK5RAP3Q96JB5 506 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms