RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 PSMD6Q15008 389 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 CDKAL1Q5VV42 579 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 CEP135Q66GS9 1140 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 KLHL10Q6JEL2 608 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 ANKS3Q6ZW76 656 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 LUZP1Q86V48 1076 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 SMRP1Q8NCR6 262 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 APPL2Q8NEU8 664 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 OR5B17Q8NGF7 314 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 ANKRD36BP1Q96IX9 119 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 SENP8Q96LD8 212 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 MFSD14AQ96MC6 490 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 FNBP1Q96RU3 617 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 POP1Q99575 1024 aaKnown RBP10.63□□□□□ -0.71
CLN3-261ENST00000637686 DUSP9Q99956 384 aaKnown RBP10.63□□□□□ -0.71
CLN3-261ENST00000637686 MKNK1Q9BUB5 465 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 MAN1C1Q9NR34 630 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 INTS13Q9NVM9 706 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 AGAP1Q9UPQ3 857 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 TIMM13Q9Y5L4 95 aaPredicted RBP10.63□□□□□ -0.71
CLN3-261ENST00000637686 BACE2Q9Y5Z0 518 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 PLXNA3P51805 1871 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 LRRC10BA6NIK2 292 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 SPDYE4A6NLX3 237 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 H7C4K7 107 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 SLC16A3O15427 465 aaKnown RBP10.62□□□□□ -0.71
CLN3-261ENST00000637686 TBC1D4O60343 1298 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 TNNI1P19237 187 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 PAX3P23760 479 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 OR1D2P34982 312 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 ARPP19P56211 112 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 RBP5P82980 135 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 RAB33AQ14088 237 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 TPD52L1Q16890 204 aaPredicted RBP10.62□□□□□ -0.71
CLN3-261ENST00000637686 DUOXA2Q1HG44 320 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 CTXN3Q4LDR2 81 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 RARS2Q5T160 578 aaKnown RBP10.62□□□□□ -0.71
CLN3-261ENST00000637686 LILRA6Q6PI73 481 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 FILIP1Q7Z7B0 1213 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 WDR49Q8IV35 697 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 RNF214Q8ND24 703 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 ANKRD20A12PQ8NF67 263 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 CXorf38Q8TB03 319 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 FEZF2Q8TBJ5 459 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 ADAMTS19Q8TE59 1207 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 BORCS6Q96GS4 357 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 NECAB3Q96P71 396 aaPredicted RBP10.62□□□□□ -0.71
CLN3-261ENST00000637686 CGRRF1Q99675 332 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 HSD3B7Q9H2F3 369 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 ADAM7Q9H2U9 754 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 DZANK1Q9NVP4 752 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 SIX4Q9UIU6 781 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 CDH22Q9UJ99 828 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 FBXL5Q9UKA1 691 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 ITGA11Q9UKX5 1188 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 FAM50BQ9Y247 325 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 FRMD4BQ9Y2L6 1034 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 USP15Q9Y4E8 981 aaPredicted RBP10.62□□□□□ -0.71
CLN3-261ENST00000637686 CDY1Q9Y6F8 540 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 SCN1AP35498 2009 aa10.62□□□□□ -0.71
CLN3-261ENST00000637686 KPNA7A9QM74 516 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 CYB561D2O14569 222 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 CETN3O15182 167 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 OAZ2O95190 189 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 C1RP00736 705 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 WEE2P0C1S8 567 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 ODC1P11926 461 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 TYMPP19971 482 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 NR2F2P24468 414 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 PNPLA4P41247 253 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 PMS1P54277 932 aaKnown RBP10.61□□□□□ -0.71
CLN3-261ENST00000637686 YWHAHQ04917 246 aaPredicted RBP10.61□□□□□ -0.71
CLN3-261ENST00000637686 BFSP1Q12934 665 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 ADAM9Q13443 819 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 SMAD2Q15796 467 aaKnown RBP10.61□□□□□ -0.71
CLN3-261ENST00000637686 ANKRD40Q6AI12 368 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 SLC8B1Q6J4K2 584 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 CES5AQ6NT32 575 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 TMC5Q6UXY8 1006 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 TRAPPC11Q7Z392 1133 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 USP37Q86T82 979 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 KREMEN2Q8NCW0 462 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 PLEKHO2Q8TD55 490 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 PARD3BQ8TEW8 1205 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 SUSD6Q92537 303 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 ZNF516Q92618 1163 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 EEF2KMTQ96G04 330 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 ZNF560Q96MR9 790 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 UHRF1Q96T88 793 aaPredicted RBP10.61□□□□□ -0.71
CLN3-261ENST00000637686 COL25A1Q9BXS0 654 aaPredicted RBP10.61□□□□□ -0.71
CLN3-261ENST00000637686 SFXN1Q9H9B4 322 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 METTL14Q9HCE5 456 aaKnown RBP10.61□□□□□ -0.71
CLN3-261ENST00000637686 FANCLQ9NW38 375 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 R3HCC1Q9Y3T6 440 aaKnown RBP10.61□□□□□ -0.71
CLN3-261ENST00000637686 A0A0C4DFX4 3053 aa10.61□□□□□ -0.71
CLN3-261ENST00000637686 VCANP13611 3396 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 CCDC195A0A1B0GUA6 201 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 TRIM49BA6NDI0 452 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 LRRIQ3A6PVS8 624 aaPredicted RBP10.6□□□□□ -0.71
CLN3-261ENST00000637686 CBFA2T2O43439 604 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms