RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 LILRA4P59901 499 aa19.98■□□□□ 0.79
CLN3-241ENST00000635861 CUL4AQ13619 759 aa19.98■□□□□ 0.79
CLN3-241ENST00000635861 MAML2Q8IZL2 1156 aaPredicted RBP19.98■□□□□ 0.79
CLN3-241ENST00000635861 KRI1Q8N9T8 703 aaKnown RBP19.98■□□□□ 0.79
CLN3-241ENST00000635861 DSEQ9UL01 958 aa19.98■□□□□ 0.79
CLN3-241ENST00000635861 C2CD2Q9Y426 696 aa19.98■□□□□ 0.79
CLN3-241ENST00000635861 STYXL1Q9Y6J8 313 aa19.98■□□□□ 0.79
CLN3-241ENST00000635861 KINO60870 393 aaKnown RBP19.97■□□□□ 0.79
CLN3-241ENST00000635861 MOSPD3O75425 235 aa19.97■□□□□ 0.79
CLN3-241ENST00000635861 CYP11A1P05108 521 aa19.97■□□□□ 0.79
CLN3-241ENST00000635861 MYL4P12829 197 aa19.97■□□□□ 0.79
CLN3-241ENST00000635861 ALDH1A3P47895 512 aa19.97■□□□□ 0.79
CLN3-241ENST00000635861 TMEM132DQ14C87 1099 aa19.97■□□□□ 0.79
CLN3-241ENST00000635861 JADE1Q6IE81 842 aa19.97■□□□□ 0.79
CLN3-241ENST00000635861 SLC39A4Q6P5W5 647 aa19.97■□□□□ 0.79
CLN3-241ENST00000635861 C1orf228Q6PIY5 440 aa19.97■□□□□ 0.79
CLN3-241ENST00000635861 HS6ST3Q8IZP7 471 aa19.97■□□□□ 0.79
CLN3-241ENST00000635861 MSANTD3Q96H12 275 aa19.97■□□□□ 0.79
CLN3-241ENST00000635861 ZHX3Q9H4I2 956 aa19.97■□□□□ 0.79
CLN3-241ENST00000635861 HEBP1Q9NRV9 189 aa19.97■□□□□ 0.79
CLN3-241ENST00000635861 SEL1LQ9UBV2 794 aa19.97■□□□□ 0.79
CLN3-241ENST00000635861 CCDC39Q9UFE4 941 aa19.97■□□□□ 0.79
CLN3-241ENST00000635861 MTF2Q9Y483 593 aaPredicted RBP19.97■□□□□ 0.79
CLN3-241ENST00000635861 PCDHGA2Q9Y5H1 932 aa19.97■□□□□ 0.79
CLN3-241ENST00000635861 TIMM13Q9Y5L4 95 aaPredicted RBP19.97■□□□□ 0.79
CLN3-241ENST00000635861 ANO9A1A5B4 782 aa19.96■□□□□ 0.79
CLN3-241ENST00000635861 PIRO00625 290 aa19.96■□□□□ 0.79
CLN3-241ENST00000635861 TARSP26639 723 aaKnown RBP19.96■□□□□ 0.79
CLN3-241ENST00000635861 GRIN1Q05586 938 aa19.96■□□□□ 0.79
CLN3-241ENST00000635861 C9orf57Q5W0N0 161 aa19.96■□□□□ 0.79
CLN3-241ENST00000635861 CENPPQ6IPU0 288 aa19.96■□□□□ 0.79
CLN3-241ENST00000635861 ARMCX5Q6P1M9 558 aa19.96■□□□□ 0.79
CLN3-241ENST00000635861 VITQ6UXI7 678 aa19.96■□□□□ 0.79
CLN3-241ENST00000635861 MAMSTRQ6ZN01 415 aa19.96■□□□□ 0.79
CLN3-241ENST00000635861 ERMP1Q7Z2K6 904 aa19.96■□□□□ 0.79
CLN3-241ENST00000635861 NT5DC4Q86YG4 428 aa19.96■□□□□ 0.79
CLN3-241ENST00000635861 MFSD6LQ8IWD5 586 aa19.96■□□□□ 0.79
CLN3-241ENST00000635861 SENP8Q96LD8 212 aa19.96■□□□□ 0.79
CLN3-241ENST00000635861 FAM126AQ9BYI3 521 aaPredicted RBP19.96■□□□□ 0.79
CLN3-241ENST00000635861 BACH2Q9BYV9 841 aa19.96■□□□□ 0.79
CLN3-241ENST00000635861 ZNF334Q9HCZ1 680 aaPredicted RBP19.96■□□□□ 0.79
CLN3-241ENST00000635861 VNN2O95498 520 aa19.95■□□□□ 0.78
CLN3-241ENST00000635861 NMT1P30419 496 aaKnown RBP19.95■□□□□ 0.78
CLN3-241ENST00000635861 SMARCB1Q12824 385 aa19.95■□□□□ 0.78
CLN3-241ENST00000635861 DUSP4Q13115 394 aa19.95■□□□□ 0.78
CLN3-241ENST00000635861 POSTNQ15063 836 aa19.95■□□□□ 0.78
CLN3-241ENST00000635861 ADALQ6DHV7 355 aa19.95■□□□□ 0.78
CLN3-241ENST00000635861 ITIH5Q86UX2 942 aa19.95■□□□□ 0.78
CLN3-241ENST00000635861 ZSCAN18Q8TBC5 510 aaPredicted RBP19.95■□□□□ 0.78
CLN3-241ENST00000635861 RUBCNQ92622 972 aa19.95■□□□□ 0.78
CLN3-241ENST00000635861 FAM212AQ96EL1 285 aa19.95■□□□□ 0.78
CLN3-241ENST00000635861 LRRC3Q9BY71 257 aa19.95■□□□□ 0.78
CLN3-241ENST00000635861 AGO2Q9UKV8 859 aaKnown RBP19.95■□□□□ 0.78
CLN3-241ENST00000635861 MORC2Q9Y6X9 1032 aaPredicted RBP19.95■□□□□ 0.78
CLN3-241ENST00000635861 OBSL1O75147 1896 aa19.95■□□□□ 0.78
CLN3-241ENST00000635861 KIF26AQ9ULI4 1882 aaPredicted RBP19.95■□□□□ 0.78
CLN3-241ENST00000635861 MTMR11A4FU01 709 aa19.94■□□□□ 0.78
CLN3-241ENST00000635861 VPS37CA5D8V6 355 aaPredicted RBP19.94■□□□□ 0.78
CLN3-241ENST00000635861 OR4Q2P0C623 313 aa19.94■□□□□ 0.78
CLN3-241ENST00000635861 CD72P21854 359 aa19.94■□□□□ 0.78
CLN3-241ENST00000635861 TXLNAP40222 546 aa19.94■□□□□ 0.78
CLN3-241ENST00000635861 ID4P47928 161 aa19.94■□□□□ 0.78
CLN3-241ENST00000635861 GRM2Q14416 872 aa19.94■□□□□ 0.78
CLN3-241ENST00000635861 ZNF720Q7Z2F6 126 aa19.94■□□□□ 0.78
CLN3-241ENST00000635861 TMC8Q8IU68 726 aa19.94■□□□□ 0.78
CLN3-241ENST00000635861 SHKBP1Q8TBC3 707 aa19.94■□□□□ 0.78
CLN3-241ENST00000635861 C2orf15Q8WU43 125 aaKnown RBP19.94■□□□□ 0.78
CLN3-241ENST00000635861 NELL1Q92832 810 aa19.94■□□□□ 0.78
CLN3-241ENST00000635861 PSMG2Q969U7 264 aa19.94■□□□□ 0.78
CLN3-241ENST00000635861 ZSWIM3Q96MP5 696 aa19.94■□□□□ 0.78
CLN3-241ENST00000635861 PGLYRP2Q96PD5 576 aa19.94■□□□□ 0.78
CLN3-241ENST00000635861 SLITRK6Q9H5Y7 841 aa19.94■□□□□ 0.78
CLN3-241ENST00000635861 PRMT8Q9NR22 394 aaPredicted RBP19.94■□□□□ 0.78
CLN3-241ENST00000635861 SRPRBQ9Y5M8 271 aaKnown RBP19.94■□□□□ 0.78
CLN3-241ENST00000635861 CEP250Q9BV73 2442 aa19.94■□□□□ 0.78
CLN3-241ENST00000635861 PPEF2O14830 753 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 ZNF263O14978 683 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 PPP1R37O75864 691 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 IL18RAPO95256 599 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 NFICP08651 508 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 GAP43P17677 238 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 GDI1P31150 447 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 TUFMP49411 452 aaKnown RBP19.93■□□□□ 0.78
CLN3-241ENST00000635861 GUCY2FP51841 1108 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 FZD5Q13467 585 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 PPP2R5DQ14738 602 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 PTPAQ15257 358 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 TEAD2Q15562 447 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 METTL23Q86XA0 190 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 ZBTB44Q8NCP5 570 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 DNAJC25Q9H1X3 360 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 ZSCAN32Q9NX65 697 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 ZMYM5Q9UJ78 669 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 EXOC7Q9UPT5 735 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 SHISA7A6NL88 538 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 ANKRD63C9JTQ0 380 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 WEE1P30291 646 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 ACOT2P49753 483 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 TAF6P49848 677 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 FCHO2Q0JRZ9 810 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms