RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CES5AQ6NT32 575 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 PRSS55Q6UWB4 352 aaPredicted RBP19.48■□□□□ 0.71
CLN3-239ENST00000628023 RBM43Q6ZSC3 357 aaKnown RBP19.48■□□□□ 0.71
CLN3-239ENST00000628023 TRAPPC11Q7Z392 1133 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 APPL2Q8NEU8 664 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 TMC2Q8TDI7 906 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 CEP63Q96MT8 703 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 RWDD2AQ9UIY3 292 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 PCDHB8Q9UN66 801 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 IRAK3Q9Y616 596 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 FGFR1OPO95684 399 aaKnown RBP19.47■□□□□ 0.71
CLN3-239ENST00000628023 ADH1AP07327 375 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 TRIM49P0CI25 452 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 TRIM49CP0CI26 452 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 FGFR3P22607 806 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 KLRC2P26717 231 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 DLG4P78352 724 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 TPD52L1Q16890 204 aaPredicted RBP19.47■□□□□ 0.71
CLN3-239ENST00000628023 KLHL40Q2TBA0 621 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 DCAF17Q5H9S7 520 aaPredicted RBP19.47■□□□□ 0.71
CLN3-239ENST00000628023 FOXR2Q6PJQ5 311 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 TRIM67Q6ZTA4 783 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 ZC3H3Q8IXZ2 948 aaKnown RBP19.47■□□□□ 0.71
CLN3-239ENST00000628023 LRRC52Q8N7C0 313 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 PLEKHO2Q8TD55 490 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 PIK3R5Q8WYR1 880 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 SENP8Q96LD8 212 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 DUSP9Q99956 384 aaKnown RBP19.47■□□□□ 0.71
CLN3-239ENST00000628023 S1PR5Q9H228 398 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 MMRN2Q9H8L6 949 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 TMEM63CQ9P1W3 806 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 SIX4Q9UIU6 781 aa19.47■□□□□ 0.71
CLN3-239ENST00000628023 SPTLC1O15269 473 aa19.46■□□□□ 0.71
CLN3-239ENST00000628023 CNPP09543 421 aaKnown RBP19.46■□□□□ 0.71
CLN3-239ENST00000628023 AARSP49588 968 aaKnown RBP eCLIP19.46■□□□□ 0.71
CLN3-239ENST00000628023 ZXDAP98168 799 aa19.46■□□□□ 0.71
CLN3-239ENST00000628023 ITIH3Q06033 890 aa19.46■□□□□ 0.71
CLN3-239ENST00000628023 VARS2Q5ST30 1063 aaKnown RBP19.46■□□□□ 0.71
CLN3-239ENST00000628023 TCERG1LQ5VWI1 586 aa19.46■□□□□ 0.71
CLN3-239ENST00000628023 ANKS3Q6ZW76 656 aa19.46■□□□□ 0.71
CLN3-239ENST00000628023 BMP8AQ7Z5Y6 402 aa19.46■□□□□ 0.71
CLN3-239ENST00000628023 GLYCTKQ8IVS8 523 aa19.46■□□□□ 0.71
CLN3-239ENST00000628023 GPR65Q8IYL9 337 aa19.46■□□□□ 0.71
CLN3-239ENST00000628023 KLHL5Q96PQ7 755 aa19.46■□□□□ 0.71
CLN3-239ENST00000628023 GZF1Q9H116 711 aaPredicted RBP19.46■□□□□ 0.71
CLN3-239ENST00000628023 ARMCX3Q9UH62 379 aaPredicted RBP19.46■□□□□ 0.71
CLN3-239ENST00000628023 NR2E1Q9Y466 385 aa19.46■□□□□ 0.71
CLN3-239ENST00000628023 TMEM221A6NGB7 291 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 KPNA7A9QM74 516 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 H7C4K7 107 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 M0QZQ0 153 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 M0R296 226 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 CYB561D2O14569 222 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 TEX28O15482 410 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 CLASP2O75122 1294 aaKnown RBP19.45■□□□□ 0.7
CLN3-239ENST00000628023 RPL17P18621 184 aaKnown RBP19.45■□□□□ 0.7
CLN3-239ENST00000628023 CLDN10P78369 228 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 YWHAHQ04917 246 aaPredicted RBP19.45■□□□□ 0.7
CLN3-239ENST00000628023 ENPEPQ07075 957 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 STX1AQ16623 288 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 TDRD10Q5VZ19 366 aaKnown RBP19.45■□□□□ 0.7
CLN3-239ENST00000628023 ZNF280DQ6N043 979 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 SYCE2Q6PIF2 218 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 FILIP1Q7Z7B0 1213 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 PPFIBP1Q86W92 1011 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 METTL23Q86XA0 190 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 LNX1Q8TBB1 728 aaPredicted RBP19.45■□□□□ 0.7
CLN3-239ENST00000628023 ZNF516Q92618 1163 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 PBXIP1Q96AQ6 731 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 HPDLQ96IR7 371 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 NECTIN4Q96NY8 510 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 APOL5Q9BWW9 433 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 METTL14Q9HCE5 456 aaKnown RBP19.45■□□□□ 0.7
CLN3-239ENST00000628023 TIMM13Q9Y5L4 95 aaPredicted RBP19.45■□□□□ 0.7
CLN3-239ENST00000628023 HCFC2Q9Y5Z7 792 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 SCN1AP35498 2009 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 VWA8A3KMH1 1905 aa19.45■□□□□ 0.7
CLN3-239ENST00000628023 SPDYE4A6NLX3 237 aa19.44■□□□□ 0.7
CLN3-239ENST00000628023 IKBKBO14920 756 aa19.44■□□□□ 0.7
CLN3-239ENST00000628023 STX10O60499 249 aa19.44■□□□□ 0.7
CLN3-239ENST00000628023 LILRB3O75022 631 aa19.44■□□□□ 0.7
CLN3-239ENST00000628023 GNA14O95837 355 aa19.44■□□□□ 0.7
CLN3-239ENST00000628023 PIK3CAP42336 1068 aa19.44■□□□□ 0.7
CLN3-239ENST00000628023 GCLMP48507 274 aa19.44■□□□□ 0.7
CLN3-239ENST00000628023 CTXN3Q4LDR2 81 aa19.44■□□□□ 0.7
CLN3-239ENST00000628023 SUGP1Q8IWZ8 645 aaKnown RBP19.44■□□□□ 0.7
CLN3-239ENST00000628023 SRRTQ9BXP5 876 aaKnown RBP19.44■□□□□ 0.7
CLN3-239ENST00000628023 ADAM7Q9H2U9 754 aa19.44■□□□□ 0.7
CLN3-239ENST00000628023 RXFP1Q9HBX9 757 aa19.44■□□□□ 0.7
CLN3-239ENST00000628023 ANO10Q9NW15 660 aa19.44■□□□□ 0.7
CLN3-239ENST00000628023 FNIP2Q9P278 1114 aa19.44■□□□□ 0.7
CLN3-239ENST00000628023 DSEQ9UL01 958 aa19.44■□□□□ 0.7
CLN3-239ENST00000628023 SNX9Q9Y5X1 595 aa19.44■□□□□ 0.7
CLN3-239ENST00000628023 PIEZO1Q92508 2521 aa19.44■□□□□ 0.7
CLN3-239ENST00000628023 GLUD1P00367 558 aa19.43■□□□□ 0.7
CLN3-239ENST00000628023 TYMPP19971 482 aa19.43■□□□□ 0.7
CLN3-239ENST00000628023 NCOA4Q13772 614 aa19.43■□□□□ 0.7
CLN3-239ENST00000628023 SKOR2Q2VWA4 1001 aaPredicted RBP19.43■□□□□ 0.7
CLN3-239ENST00000628023 OVOS1Q6IE37 1185 aa19.43■□□□□ 0.7
CLN3-239ENST00000628023 FRMD5Q7Z6J6 570 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms