RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	FAM26D	Q5JW98	314 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	SPOPL	Q6IQ16	392 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	TAF2	Q6P1X5	1199 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	SYT10	Q6XYQ8	523 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	FAM43B	Q6ZT52	329 aa	Predicted RBP	10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	SPRED2	Q7Z698	418 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	NME8	Q8N427	588 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	SLC30A5	Q8TAD4	765 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	PABPC5	Q96DU9	382 aa	Known RBP	10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	NT5C1B	Q96P26	610 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	YME1L1	Q96TA2	773 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	ADPGK	Q9BRR6	497 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	C17orf80	Q9BSJ5	609 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	OSBPL7	Q9BZF2	842 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	MTMR12	Q9C0I1	747 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	KCNH6	Q9H252	994 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	ADAMTS1	Q9UHI8	967 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	ZC3H11A	O75152	810 aa	Known RBP eCLIP	10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	RPLP2	P05387	115 aa	Known RBP	10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	CCDC172	P0C7W6	258 aa		10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	SSTR3	P32745	418 aa	Predicted RBP	10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	VAV2	P52735	878 aa		10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	KYAT1	Q16773	422 aa		10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	CATSPER4	Q7RTX7	472 aa		10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	KIAA1328	Q86T90	577 aa		10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	RPAIN	Q86UA6	219 aa		10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	DNAAF5	Q86Y56	855 aa		10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	PALB2	Q86YC2	1186 aa		10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	FAM71A	Q8IYT1	594 aa		10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	PPM1K	Q8N3J5	372 aa		10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	LNX1	Q8TBB1	728 aa	Predicted RBP	10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	FAM212A	Q96EL1	285 aa		10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	EIF2A	Q9BY44	585 aa	Known RBP	10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	NSUN3	Q9H649	340 aa	Known RBP	10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	RPF1	Q9H9Y2	349 aa	Known RBP	10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	ACP6	Q9NPH0	428 aa		10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	SALL4	Q9UJQ4	1053 aa		10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	PCDHA13	Q9Y5I0	950 aa		10.2	□□□□□ -0.78
PDLIM5-223	ENST00000627587	MICAL3	Q7RTP6	2002 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	LACTBL1	A8MY62	500 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	DDX3X	O00571	662 aa	Known RBP eCLIP	10.19	□□□□□ -0.78	8e-10	■■■□□ 15.6
PDLIM5-223	ENST00000627587	NFIC	P08651	508 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	PIK3CA	P42336	1068 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	CRYBB1	P53674	252 aa	Predicted RBP	10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	MFAP3	P55082	362 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	POU5F1	Q01860	360 aa	Known RBP	10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	GCNT1	Q02742	428 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	WDR44	Q5JSH3	913 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	TRAPPC11	Q7Z392	1133 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	RSPH3	Q86UC2	560 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	FIBCD1	Q8N539	461 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	SLC20A1	Q8WUM9	679 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	FAM81B	Q96LP2	452 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	PACSIN1	Q9BY11	444 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	IFIH1	Q9BYX4	1025 aa	Known RBP	10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	XYLT2	Q9H1B5	865 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	SIX4	Q9UIU6	781 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	NUB1	Q9Y5A7	615 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	COL4A6	Q14031	1691 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	MUC3A	Q02505	3323 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	PJA2	O43164	708 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	PHACTR2	O75167	634 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	IL18RAP	O95256	599 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	ASS1	P00966	412 aa	Known RBP	10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	CHRNA1	P02708	482 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	CLTA	P09496	248 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	ACO1	P21399	889 aa	Known RBP	10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	ANXA13	P27216	316 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	MGAT3	Q09327	533 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	NCOA4	Q13772	614 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	COL19A1	Q14993	1142 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	DCAF4L1	Q3SXM0	396 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	UBXN11	Q5T124	520 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	ASTL	Q6HA08	431 aa	Predicted RBP	10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	JADE1	Q6IE81	842 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	VPS36	Q86VN1	386 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	FAM228A	Q86W67	206 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	TXLNB	Q8N3L3	684 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	EPS8L1	Q8TE68	723 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	ZNF592	Q92610	1267 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	CELF4	Q9BZC1	486 aa	Known RBP	10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	CD320	Q9NPF0	282 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	LUC7L	Q9NQ29	371 aa	Known RBP	10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	C11orf16	Q9NQ32	467 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	C1orf112	Q9NSG2	853 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	DNAI1	Q9UI46	699 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	NAGPA	Q9UK23	515 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	NOCT	Q9UK39	431 aa	Known RBP	10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	R3HCC1	Q9Y3T6	440 aa	Known RBP	10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	HES2	Q9Y543	173 aa		10.19	□□□□□ -0.78
PDLIM5-223	ENST00000627587	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	10.18	□□□□□ -0.78
PDLIM5-223	ENST00000627587	C5orf67	F2Z3F1	127 aa		10.18	□□□□□ -0.78
PDLIM5-223	ENST00000627587		M0QZ92	97 aa		10.18	□□□□□ -0.78
PDLIM5-223	ENST00000627587	KRT86	O43790	486 aa		10.18	□□□□□ -0.78
PDLIM5-223	ENST00000627587	KIF5C	O60282	957 aa		10.18	□□□□□ -0.78
PDLIM5-223	ENST00000627587	UPP2	O95045	317 aa		10.18	□□□□□ -0.78
PDLIM5-223	ENST00000627587	NPTXR	O95502	500 aa		10.18	□□□□□ -0.78
PDLIM5-223	ENST00000627587	CALCA	P01258	141 aa		10.18	□□□□□ -0.78

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