RNA–Protein interactions for RNA: ENST00000621783.4

CPNE3-212, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 817 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-212ENST00000621783 TMEM270Q6UE05 265 aa11.4□□□□□ -0.58
CPNE3-212ENST00000621783 VPS36Q86VN1 386 aa11.4□□□□□ -0.58
CPNE3-212ENST00000621783 REXO1L1PQ8IX06 675 aa11.4□□□□□ -0.58
CPNE3-212ENST00000621783 RPUSD2Q8IZ73 545 aaKnown RBP11.4□□□□□ -0.58
CPNE3-212ENST00000621783 URGCPQ8TCY9 931 aa11.4□□□□□ -0.58
CPNE3-212ENST00000621783 ATRIPQ8WXE1 791 aa11.4□□□□□ -0.58
CPNE3-212ENST00000621783 AGPAT1Q99943 283 aa11.4□□□□□ -0.58
CPNE3-212ENST00000621783 NENFQ9UMX5 172 aa11.4□□□□□ -0.58
CPNE3-212ENST00000621783 PCDHB7Q9Y5E2 793 aa11.4□□□□□ -0.58
CPNE3-212ENST00000621783 SNX9Q9Y5X1 595 aa11.4□□□□□ -0.58
CPNE3-212ENST00000621783 SCN1AP35498 2009 aa11.4□□□□□ -0.59
CPNE3-212ENST00000621783 TSC2P49815 1807 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 TET1Q8NFU7 2136 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 CILPO75339 1184 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 MMEP08473 750 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 CSF2RAP15509 400 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 CHRNB2P17787 502 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 GNA15P30679 374 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 GATMP50440 423 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 CLCNKBP51801 687 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 KRT83P78385 493 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 CDR2Q01850 454 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 INCA1Q0VD86 236 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 TUSC3Q13454 348 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 BMS1Q14692 1282 aaKnown RBP11.39□□□□□ -0.59
CPNE3-212ENST00000621783 TAF3Q5VWG9 929 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 MFSD5Q6N075 450 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 KIAA1328Q86T90 577 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 NPAS4Q8IUM7 802 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 GLYCTKQ8IVS8 523 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 C3orf58Q8NDZ4 430 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 SLC30A5Q8TAD4 765 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 DDX1Q92499 740 aaKnown RBP11.39□□□□□ -0.59
CPNE3-212ENST00000621783 UROC1Q96N76 676 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 MMS19Q96T76 1030 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 MRPL45Q9BRJ2 306 aaKnown RBP11.39□□□□□ -0.59
CPNE3-212ENST00000621783 PAAF1Q9BRP4 392 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 GDAP2Q9NXN4 497 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 PCDH10Q9P2E7 1040 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 HMGXB4Q9UGU5 601 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 ADAMTS1Q9UHI8 967 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 LRFN2Q9ULH4 789 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 COL4A6Q14031 1691 aa11.39□□□□□ -0.59
CPNE3-212ENST00000621783 GOLGA6L9A6NEM1 432 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 KPNA7A9QM74 516 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 HOXA2O43364 376 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 B4GALT3O60512 393 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 TNFAIP3P21580 790 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 IGFBP6P24592 240 aaPredicted RBP11.38□□□□□ -0.59
CPNE3-212ENST00000621783 RPL9P32969 192 aaKnown RBP11.38□□□□□ -0.59
CPNE3-212ENST00000621783 VAV2P52735 878 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 BPIFB4P59827 614 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 LILRA4P59901 499 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 FMO1Q01740 532 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 DSC1Q08554 894 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 ORC1Q13415 861 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 IKBKEQ14164 716 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 UPP1Q16831 310 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 ZNF394Q53GI3 561 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.38□□□□□ -0.59
CPNE3-212ENST00000621783 PALB2Q86YC2 1186 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 ABI1Q8IZP0 508 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 CRIPAKQ8N1N5 446 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 TMEM199Q8N511 208 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 TTC39CQ8N584 583 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 WHAMMQ8TF30 809 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 TWNKQ96RR1 684 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 PCDHB18PQ96TA0 734 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 FAM124BQ9H5Z6 455 aaPredicted RBP11.38□□□□□ -0.59
CPNE3-212ENST00000621783 SEPT11Q9NVA2 429 aaKnown RBP11.38□□□□□ -0.59
CPNE3-212ENST00000621783 TBC1D13Q9NVG8 400 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 NAGPAQ9UK23 515 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 BARX2Q9UMQ3 279 aaPredicted RBP11.38□□□□□ -0.59
CPNE3-212ENST00000621783 PCDHA13Q9Y5I0 950 aa11.38□□□□□ -0.59
CPNE3-212ENST00000621783 ATP8B3O60423 1300 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 RCCD1A6NED2 376 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 THAP12O43422 761 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 DDHD2O94830 711 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 PFKMP08237 780 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 BRD2P25440 801 aaKnown RBP11.37□□□□□ -0.59
CPNE3-212ENST00000621783 ARHGAP25P42331 645 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 MAGEA1P43355 309 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 AARSP49588 968 aaKnown RBP eCLIP11.37□□□□□ -0.59
CPNE3-212ENST00000621783 NDST1P52848 882 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 RAD23BP54727 409 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 SOWAHAQ2M3V2 549 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 CCDC122Q5T0U0 273 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 ALKBH5Q6P6C2 394 aaKnown RBP11.37□□□□□ -0.59
CPNE3-212ENST00000621783 LIMS2Q7Z4I7 341 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 ZNF677Q86XU0 584 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 COLGALT2Q8IYK4 626 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 ADGRF2Q8IZF7 708 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 KBTBD7Q8WVZ9 684 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 RABGGTAQ92696 567 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 DDX27Q96GQ7 796 aaKnown RBP11.37□□□□□ -0.59
CPNE3-212ENST00000621783 CASD1Q96PB1 797 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 PACSIN1Q9BY11 444 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 ELOVL4Q9GZR5 314 aa11.37□□□□□ -0.59
CPNE3-212ENST00000621783 LUC7LQ9NQ29 371 aaKnown RBP11.37□□□□□ -0.59
CPNE3-212ENST00000621783 KANSL3Q9P2N6 904 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms