RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ZNF568Q3ZCX4 644 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 PRAMEF19Q5SWL8 479 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 EEF1DP3Q658K8 133 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 ZDHHC14Q8IZN3 488 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 HES6Q96HZ4 224 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 DDX3YO15523 660 aaKnown RBP15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 MUTP22033 750 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 INHBEP58166 350 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 CDR2Q01850 454 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 SMTNL2Q2TAL5 461 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 ZBTB8OSQ8IWT0 167 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 ANKRD42Q8N9B4 389 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 NLRP7Q8WX94 980 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 FMO2Q99518 471 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 ZNF112Q9UJU3 913 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 NOCTQ9UK39 431 aaKnown RBP15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 PNMA3Q9UL41 463 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 KIF3CO14782 793 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 EXTL3O43909 919 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 NQO1P15559 274 aaKnown RBP15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 TCF4P15884 667 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 YBX3P16989 372 aaKnown RBP eCLIP15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 GTF2H1P32780 548 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 RPL7AP62424 266 aaKnown RBP15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 TAF11Q15544 211 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 KCNT1Q5JUK3 1230 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 RBBP8NLQ8NC74 664 aaPredicted RBP15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 SCFD2Q8WU76 684 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 LRRN4Q8WUT4 740 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 SHC3Q92529 594 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 LBHD1Q9BQE6 289 aaPredicted RBP15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 RBPJLQ9UBG7 517 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 TBK1Q9UHD2 729 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 POLIQ9UNA4 740 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 DOCK5Q9H7D0 1870 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 UBE4BO95155 1302 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 GRAP2O75791 330 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 MAP3K6O95382 1288 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 GHRP10912 638 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 LAMTOR4Q0VGL1 99 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 MAPK6Q16659 721 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 SGO2Q562F6 1265 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 ARMC3Q5W041 872 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 ZCWPW1Q9H0M4 648 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 MINDY3Q9H8M7 445 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 EBF2Q9HAK2 575 aa15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 SAE1Q9UBE0 346 aaPredicted RBP15.33■□□□□ 0.04
SHROOM1-208ENST00000617339 MAFGO15525 162 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 DYNC1LI2O43237 492 aaPredicted RBP15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 LYPLA2O95372 231 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 PRKCBP05771 671 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 KRT16P08779 473 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 CXCL8P10145 99 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 HOXA7P31268 230 aaPredicted RBP15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 SNAPC2Q13487 334 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 RHOT2Q8IXI1 618 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 ATP8B4Q8TF62 1192 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 PSPC1Q8WXF1 523 aaKnown RBP15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 LENG1Q96BZ8 264 aaPredicted RBP15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 NOD1Q9Y239 953 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 JAMLQ86YT9 394 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 MAB21L3Q8N8X9 362 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 C1orf131Q8NDD1 294 aaKnown RBP15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 SH3GL3Q99963 347 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 CHST7Q9NS84 486 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 FGFR1OP2Q9NVK5 253 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 TJP2Q9UDY2 1190 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 PCSK1NQ9UHG2 260 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 TLR3O15455 904 aaKnown RBP15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 VNN1O95497 513 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 RARAP10276 462 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 TAF1CQ15572 869 aaPredicted RBP15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 AMHR2Q16671 573 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 DENND2CQ68D51 928 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 TTC27Q6P3X3 843 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 CCDC33Q8N5R6 958 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 OLIG1Q8TAK6 271 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 GDAP1Q8TB36 358 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 ACTRT1Q8TDG2 376 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 EPS8L3Q8TE67 593 aaKnown RBP15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 ZWILCHQ9H900 591 aa15.32■□□□□ 0.04
SHROOM1-208ENST00000617339 ADCYAP1R1P41586 468 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 CRELD2Q6UXH1 353 aaPredicted RBP15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 C3orf20Q8ND61 904 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 ZSWIM1Q9BR11 485 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 OSBPL1AQ9BXW6 950 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 ARHGAP28Q9P2N2 729 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 SRRM3A6NNA2 597 aaPredicted RBP15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 GOLGA8MH3BSY2 632 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 FDX1P10109 184 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 NFX1Q12986 1120 aaKnown RBP15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 GLRA4Q5JXX5 417 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 FASTKD5Q7L8L6 764 aaKnown RBP15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 EMC1Q8N766 993 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 PRELID2Q8N945 189 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 AFG1LQ8WV93 481 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 CNOT10Q9H9A5 744 aaKnown RBP15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 HES2Q9Y543 173 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 A0A087WZ62 844 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 NCALDP61601 193 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms