RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 TAS1R2Q8TE23 839 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 SEMA4DQ92854 862 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 FRMD4BQ9Y2L6 1034 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 DENND4AQ7Z401 1863 aa14.52□□□□□ -0.08
LINC00540-202ENST00000616974 GOLGA6L22H0YM25 854 aa14.52□□□□□ -0.09
LINC00540-202ENST00000616974 SOAT2O75908 522 aa14.52□□□□□ -0.09
LINC00540-202ENST00000616974 SEC24AO95486 1093 aa14.52□□□□□ -0.09
LINC00540-202ENST00000616974 PAK1Q13153 545 aa14.52□□□□□ -0.09
LINC00540-202ENST00000616974 BIRC3Q13489 604 aa14.52□□□□□ -0.09
LINC00540-202ENST00000616974 CTXN3Q4LDR2 81 aa14.52□□□□□ -0.09
LINC00540-202ENST00000616974 PDE12Q6L8Q7 609 aaKnown RBP14.52□□□□□ -0.09
LINC00540-202ENST00000616974 SCARA5Q6ZMJ2 495 aa14.52□□□□□ -0.09
LINC00540-202ENST00000616974 C15orf39Q6ZRI6 1047 aa14.52□□□□□ -0.09
LINC00540-202ENST00000616974 PDCL2Q8N4E4 241 aa14.52□□□□□ -0.09
LINC00540-202ENST00000616974 ST13P5Q8NFI4 369 aaPredicted RBP14.52□□□□□ -0.09
LINC00540-202ENST00000616974 KBTBD7Q8WVZ9 684 aa14.52□□□□□ -0.09
LINC00540-202ENST00000616974 DHTKD1Q96HY7 919 aaPredicted RBP14.52□□□□□ -0.09
LINC00540-202ENST00000616974 HPDLQ96IR7 371 aa14.52□□□□□ -0.09
LINC00540-202ENST00000616974 S1PR5Q9H228 398 aa14.52□□□□□ -0.09
LINC00540-202ENST00000616974 TMLHEQ9NVH6 421 aa14.52□□□□□ -0.09
LINC00540-202ENST00000616974 ITGA11Q9UKX5 1188 aa14.52□□□□□ -0.09
LINC00540-202ENST00000616974 PCDHB8Q9UN66 801 aa14.52□□□□□ -0.09
LINC00540-202ENST00000616974 ZNF638Q14966 1978 aaKnown RBP14.52□□□□□ -0.09
LINC00540-202ENST00000616974 XPOTO43592 962 aaKnown RBP14.51□□□□□ -0.09
LINC00540-202ENST00000616974 LMO2P25791 158 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 PSMC2P35998 433 aaKnown RBP14.51□□□□□ -0.09
LINC00540-202ENST00000616974 CDH8P55286 799 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 DCAF17Q5H9S7 520 aaPredicted RBP14.51□□□□□ -0.09
LINC00540-202ENST00000616974 RARS2Q5T160 578 aaKnown RBP14.51□□□□□ -0.09
LINC00540-202ENST00000616974 RNF19BQ6ZMZ0 732 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 SMRP1Q8NCR6 262 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 MRPL45Q9BRJ2 306 aaKnown RBP14.51□□□□□ -0.09
LINC00540-202ENST00000616974 SRRTQ9BXP5 876 aaKnown RBP14.51□□□□□ -0.09
LINC00540-202ENST00000616974 APOBEC3GQ9HC16 384 aaKnown RBP14.51□□□□□ -0.09
LINC00540-202ENST00000616974 GREB1Q4ZG55 1949 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 CETN3O15182 167 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 TRAPPC3O43617 180 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 ATP2C2O75185 946 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 KIF20AO95235 890 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 TNNC2P02585 160 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 FKBP3Q00688 224 aaKnown RBP14.51□□□□□ -0.09
LINC00540-202ENST00000616974 YWHAHQ04917 246 aaPredicted RBP14.51□□□□□ -0.09
LINC00540-202ENST00000616974 ELAVL2Q12926 359 aaKnown RBP14.51□□□□□ -0.09
LINC00540-202ENST00000616974 ORC1Q13415 861 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 ZACNQ401N2 412 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 ANKRD54Q6NXT1 300 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 NT5DC4Q86YG4 428 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 CACTINQ8WUQ7 758 aaKnown RBP14.51□□□□□ -0.09
LINC00540-202ENST00000616974 SLC35C1Q96A29 364 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 EMILIN2Q9BXX0 1053 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 RHOBTB2Q9BYZ6 727 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 SDCBP2Q9H190 292 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 SMYD3Q9H7B4 428 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 CD320Q9NPF0 282 aa14.51□□□□□ -0.09
LINC00540-202ENST00000616974 ZDBF2Q9HCK1 2354 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 SYN3O14994 580 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 GLUD1P00367 558 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 ADH1AP07327 375 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 BMP1P13497 986 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 NLRP12P59046 1061 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 RBP5P82980 135 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 LRRC63Q05C16 580 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 NCOA4Q13772 614 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 MYBPC2Q14324 1141 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 WDR72Q3MJ13 1102 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 OVOS1Q6IE37 1185 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 TRIML1Q8N9V2 468 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 ATAD1Q8NBU5 361 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 FNIP2Q9P278 1114 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 NXF1Q9UBU9 619 aaKnown RBP14.5□□□□□ -0.09
LINC00540-202ENST00000616974 HMGXB4Q9UGU5 601 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 OAZ2O95190 189 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 HLA-DRAP01903 254 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 TCERG1LQ5VWI1 586 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 PTCRAQ6ISU1 281 aaPredicted RBP14.5□□□□□ -0.09
LINC00540-202ENST00000616974 SLC8B1Q6J4K2 584 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 TMEM184AQ6ZMB5 413 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 ANKS3Q6ZW76 656 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 KREMEN2Q8NCW0 462 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 TMC2Q8TDI7 906 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 ASB2Q96Q27 587 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 ARID3AQ99856 593 aa14.5□□□□□ -0.09
LINC00540-202ENST00000616974 USP15Q9Y4E8 981 aaPredicted RBP14.5□□□□□ -0.09
LINC00540-202ENST00000616974 MBTPS2O43462 519 aa14.49□□□□□ -0.09
LINC00540-202ENST00000616974 ODC1P11926 461 aa14.49□□□□□ -0.09
LINC00540-202ENST00000616974 RPL13P26373 211 aaKnown RBP14.49□□□□□ -0.09
LINC00540-202ENST00000616974 PSMC1P62191 440 aaKnown RBP14.49□□□□□ -0.09
LINC00540-202ENST00000616974 NTHL1P78549 312 aa14.49□□□□□ -0.09
LINC00540-202ENST00000616974 APBA1Q02410 837 aa14.49□□□□□ -0.09
LINC00540-202ENST00000616974 STIM1Q13586 685 aa14.49□□□□□ -0.09
LINC00540-202ENST00000616974 SV2CQ496J9 727 aa14.49□□□□□ -0.09
LINC00540-202ENST00000616974 POTEHQ6S545 545 aa14.49□□□□□ -0.09
LINC00540-202ENST00000616974 INTS8Q75QN2 995 aaKnown RBP14.49□□□□□ -0.09
LINC00540-202ENST00000616974 LRRC52Q8N7C0 313 aa14.49□□□□□ -0.09
LINC00540-202ENST00000616974 SLC7A14Q8TBB6 771 aa14.49□□□□□ -0.09
LINC00540-202ENST00000616974 PPP2R3CQ969Q6 453 aa14.49□□□□□ -0.09
LINC00540-202ENST00000616974 ZNF707Q96C28 371 aaPredicted RBP14.49□□□□□ -0.09
LINC00540-202ENST00000616974 TSPAN18Q96SJ8 248 aa14.49□□□□□ -0.09
LINC00540-202ENST00000616974 TSG101Q99816 390 aa14.49□□□□□ -0.09
LINC00540-202ENST00000616974 DPEP3Q9H4B8 488 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms