RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 SNX27Q96L92 541 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 TSPAN18Q96SJ8 248 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 SH3GL2Q99962 352 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 LRRC1Q9BTT6 524 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 TRAIPQ9BWF2 469 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 APOL6Q9BWW8 343 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 GDF3Q9NR23 364 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 C1orf112Q9NSG2 853 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 FAM105AQ9NUU6 356 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 TMEM59LQ9UK28 342 aa12.51□□□□□ -0.41
VRK3-223ENST00000601341 GOLGA6BA6NDN3 693 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 OPA1O60313 960 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 NFICP08651 508 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 STAT1P42224 750 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 LMAN1P49257 510 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 RAB27AP51159 221 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 MFAP3P55082 362 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 NAP1L1P55209 391 aaKnown RBP12.5□□□□□ -0.41
VRK3-223ENST00000601341 GCNT1Q02742 428 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 ZSCAN26Q16670 478 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 ALKBH5Q6P6C2 394 aaKnown RBP12.5□□□□□ -0.41
VRK3-223ENST00000601341 ALKAL1Q6UXT8 129 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 FAM43BQ6ZT52 329 aaPredicted RBP12.5□□□□□ -0.41
VRK3-223ENST00000601341 ENOSF1Q7L5Y1 443 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 SLFN11Q7Z7L1 901 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 ARHGEF19Q8IW93 802 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 C1orf131Q8NDD1 294 aaKnown RBP12.5□□□□□ -0.41
VRK3-223ENST00000601341 ACTRT1Q8TDG2 376 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.5□□□□□ -0.41
VRK3-223ENST00000601341 OSBPL7Q9BZF2 842 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 CNTN3Q9P232 1028 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 PARP2Q9UGN5 583 aa12.5□□□□□ -0.41
VRK3-223ENST00000601341 GOLGA8KD6RF30 607 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 BUB1O43683 1085 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 ZNF623O75123 536 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 AKAP5P24588 427 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 TNNC1P63316 161 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 TLE2Q04725 743 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 DSC3Q14574 896 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 MBTPS1Q14703 1052 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 DRAP1Q14919 205 aaPredicted RBP12.49□□□□□ -0.41
VRK3-223ENST00000601341 CLUL1Q15846 466 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 ARHGAP44Q17R89 818 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 SGSM1Q2NKQ1 1148 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 ZNF571Q7Z3V5 609 aaPredicted RBP12.49□□□□□ -0.41
VRK3-223ENST00000601341 LRRC57Q8N9N7 239 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 HELQQ8TDG4 1101 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 DIS3LQ8TF46 1054 aaKnown RBP12.49□□□□□ -0.41
VRK3-223ENST00000601341 TAF4BQ92750 862 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 KIF12Q96FN5 646 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 PI4K2AQ9BTU6 479 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 RNF39Q9H2S5 420 aa12.49□□□□□ -0.41
VRK3-223ENST00000601341 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.49□□□□□ -0.414e-6■■■■■ 48.8
VRK3-223ENST00000601341 DMGDHQ9UI17 866 aaKnown RBP12.49□□□□□ -0.41
VRK3-223ENST00000601341 AJAP1Q9UKB5 411 aaPredicted RBP12.49□□□□□ -0.41
VRK3-223ENST00000601341 A0A0U1RQF3 1178 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 ERICH4A6NGS2 130 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 F8VZ95 297 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 ASS1P00966 412 aaKnown RBP12.48□□□□□ -0.41
VRK3-223ENST00000601341 CST3P01034 146 aaPredicted RBP12.48□□□□□ -0.41
VRK3-223ENST00000601341 MYBL2P10244 700 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 SKIP12755 728 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 ITGA4P13612 1032 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 SOX5P35711 763 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 HNRNPH2P55795 449 aaKnown RBP12.48□□□□□ -0.41
VRK3-223ENST00000601341 FAAP100Q0VG06 881 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 RPS6KA1Q15418 735 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 TRIM60Q495X7 471 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 XKR4Q5GH76 650 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 MRPL10Q7Z7H8 261 aaKnown RBP12.48□□□□□ -0.41
VRK3-223ENST00000601341 C1orf127Q8N9H9 656 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 WHAMMQ8TF30 809 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 TATDN2Q93075 761 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 PAWRQ96IZ0 340 aaKnown RBP12.48□□□□□ -0.41
VRK3-223ENST00000601341 ADAM2Q99965 735 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 C11orf49Q9H6J7 331 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 FAM204AQ9H8W3 233 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 RBM12Q9NTZ6 932 aaKnown RBP12.48□□□□□ -0.41
VRK3-223ENST00000601341 ITGA11Q9UKX5 1188 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 SMIM28A0A1B0GU29 152 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 CCDC188H7C350 402 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 AGPSO00116 658 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 XPOTO43592 962 aaKnown RBP12.48□□□□□ -0.41
VRK3-223ENST00000601341 SHOX2O60902 331 aaPredicted RBP12.48□□□□□ -0.41
VRK3-223ENST00000601341 PARNO95453 639 aaKnown RBP12.48□□□□□ -0.41
VRK3-223ENST00000601341 KRT19P08727 400 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 H2AFZP0C0S5 128 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 KCNE1P15382 129 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 TBXAS1P24557 533 aaPredicted RBP12.48□□□□□ -0.41
VRK3-223ENST00000601341 ATICP31939 592 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 MYL6P60660 151 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 NOP14P78316 857 aaKnown RBP12.48□□□□□ -0.41
VRK3-223ENST00000601341 ARID5AQ03989 594 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 ZBTB6Q15916 424 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 PPP2R5EQ16537 467 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 H2AFVQ71UI9 128 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 NECAB2Q7Z6G3 386 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 BEST2Q8NFU1 509 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 KREMEN1Q96MU8 473 aa12.48□□□□□ -0.41
VRK3-223ENST00000601341 FTHL17Q9BXU8 183 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms