RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 NAA15Q9BXJ9 866 aaKnown RBP15.38■□□□□ 0.05
UPF1-211ENST00000600868 PBX4Q9BYU1 374 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 TTYH3Q9C0H2 523 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 CEP72Q9P209 647 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 DNAJC12Q9UKB3 198 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 DSEQ9UL01 958 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 POLIQ9UNA4 740 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 YBX2Q9Y2T7 364 aaKnown RBP15.38■□□□□ 0.05
UPF1-211ENST00000600868 FHOD1Q9Y613 1164 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 SF3B1O75533 1304 aaKnown RBP eCLIP15.38■□□□□ 0.05
UPF1-211ENST00000600868 A0A1W2PQJ5 194 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 SYN3O14994 580 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 HUS1O60921 280 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 TACC1O75410 805 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 CYP11A1P05108 521 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 RB1P06400 928 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 TYMPP19971 482 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 PBX2P40425 430 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 MFAP3P55082 362 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 POLR2FP61218 127 aaKnown RBP15.37■□□□□ 0.05
UPF1-211ENST00000600868 YWHAEP62258 255 aaKnown RBP15.37■□□□□ 0.05
UPF1-211ENST00000600868 SMAD3P84022 425 aaKnown RBP15.37■□□□□ 0.05
UPF1-211ENST00000600868 PLCB3Q01970 1234 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 TRIM14Q14142 442 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 SOWAHAQ2M3V2 549 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 GJB7Q6PEY0 223 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 RNF168Q8IYW5 571 aaPredicted RBP15.37■□□□□ 0.05
UPF1-211ENST00000600868 TMEM86AQ8N2M4 240 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 TTC39CQ8N584 583 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 APPL2Q8NEU8 664 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 TMEM169Q96HH4 297 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 MMS19Q96T76 1030 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 STK33Q9BYT3 514 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 GPR62Q9BZJ7 368 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 SMYD3Q9H7B4 428 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 STK39Q9UEW8 545 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 PCDHB8Q9UN66 801 aa15.37■□□□□ 0.05
UPF1-211ENST00000600868 C5orf67F2Z3F1 127 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 I3L4J1 428 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 ARHGEF15O94989 841 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 CDH8P55286 799 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 ERVK-21P61565 698 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 TAP1Q03518 808 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 TBX2Q13207 712 aaPredicted RBP15.36■□□□□ 0.05
UPF1-211ENST00000600868 SCARA5Q6ZMJ2 495 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 TMC6Q7Z403 805 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 DDX53Q86TM3 631 aaKnown RBP15.36■□□□□ 0.05
UPF1-211ENST00000600868 PDCL2Q8N4E4 241 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 UBR7Q8N806 425 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 ANP32BQ92688 251 aaKnown RBP15.36■□□□□ 0.05
UPF1-211ENST00000600868 KAT5Q92993 513 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 TGS1Q96RS0 853 aaKnown RBP15.36■□□□□ 0.05
UPF1-211ENST00000600868 ARID3AQ99856 593 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 SDCBP2Q9H190 292 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 AJAP1Q9UKB5 411 aaPredicted RBP15.36■□□□□ 0.05
UPF1-211ENST00000600868 MYO6Q9UM54 1294 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 CAPN11Q9UMQ6 739 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 L1RE1Q9UN81 338 aa15.36■□□□□ 0.05
UPF1-211ENST00000600868 NLRC5Q86WI3 1866 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 FGF18O76093 207 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 GYPCP04921 128 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 WEE2P0C1S8 567 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 ACO1P21399 889 aaKnown RBP15.35■□□□□ 0.05
UPF1-211ENST00000600868 FGFR3P22607 806 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 WARSP23381 471 aaKnown RBP15.35■□□□□ 0.05
UPF1-211ENST00000600868 CTNNB1P35222 781 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 JAM2P57087 298 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 KRT17Q04695 432 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 INCA1Q0VD86 236 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 DRAP1Q14919 205 aaPredicted RBP15.35■□□□□ 0.05
UPF1-211ENST00000600868 LRIT3Q3SXY7 679 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 FAM171A1Q5VUB5 890 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 WSCD1Q658N2 575 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.35■□□□□ 0.05
UPF1-211ENST00000600868 CACNA2D4Q7Z3S7 1137 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 PPFIBP1Q86W92 1011 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 ADGRF2Q8IZF7 708 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 KLHL23Q8NBE8 558 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 KBTBD7Q8WVZ9 684 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 SHC3Q92529 594 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 BAP1Q92560 729 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 C17orf80Q9BSJ5 609 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 VN1R3Q9BXE9 311 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 NLRC4Q9NPP4 1024 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 CISHQ9NSE2 258 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 CNTN6Q9UQ52 1028 aa15.35■□□□□ 0.05
UPF1-211ENST00000600868 GABRDO14764 452 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 SOD2P04179 222 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 TPM1P09493 284 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 TKTP29401 623 aaKnown RBP15.34■□□□□ 0.05
UPF1-211ENST00000600868 RAP1GAPP47736 663 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 LHX1P48742 406 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 RAPGEF1Q13905 1077 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 ARHGAP44Q17R89 818 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 USP41Q3LFD5 358 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 PRPF38BQ5VTL8 546 aaKnown RBP15.34■□□□□ 0.05
UPF1-211ENST00000600868 UNC93AQ86WB7 457 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 METTL23Q86XA0 190 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 DRC7Q8IY82 874 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 GPR65Q8IYL9 337 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms