RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 CEP250Q9BV73 2442 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 TRIM49BA6NDI0 452 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 SPDYE4A6NLX3 237 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 I3L4J1 428 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 PAPLNO95428 1278 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 THP07101 528 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 PPP1R2P41236 205 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 GRM5P41594 1212 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 WNT7BP56706 349 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 OSTNP61366 133 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 NTHL1P78549 312 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 POU5F1Q01860 360 aaKnown RBP9.49□□□□□ -0.89
TRIM28-214ENST00000600840 EDRF1Q3B7T1 1238 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 FAM171A1Q5VUB5 890 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 SLFN12LQ6IEE8 588 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 C15orf39Q6ZRI6 1047 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 STXBP4Q6ZWJ1 553 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 HACE1Q8IYU2 909 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 SMG7Q92540 1137 aaKnown RBP9.49□□□□□ -0.89
TRIM28-214ENST00000600840 PPP1R10Q96QC0 940 aaKnown RBP9.49□□□□□ -0.89
TRIM28-214ENST00000600840 HSD3B7Q9H2F3 369 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 TBC1D17Q9HA65 648 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 WDR6Q9NNW5 1121 aaKnown RBP9.49□□□□□ -0.89
TRIM28-214ENST00000600840 FNIP2Q9P278 1114 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 RWDD2AQ9UIY3 292 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 EXOC7Q9UPT5 735 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 SSX2IPQ9Y2D8 614 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 PATJQ8NI35 1801 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 MIA3Q5JRA6 1907 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 MAP1BP46821 2468 aaKnown RBP9.48□□□□□ -0.89
TRIM28-214ENST00000600840 CITO14578 2027 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 GOLGA6L3A6NEY3 463 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 HNRNPDLO14979 420 aaKnown RBP9.48□□□□□ -0.89
TRIM28-214ENST00000600840 CLIC2O15247 247 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 OGTO15294 1046 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 CLDN3O15551 220 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 LRRN2O75325 713 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 AKAP3O75969 853 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 KIF20AO95235 890 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 RFX1P22670 979 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 TNFSF9P41273 254 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 BRCC3P46736 316 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 CASP4P49662 377 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 LIG4P49917 911 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 CLCNKBP51801 687 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 IQCB1Q15051 598 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 TMEM132AQ24JP5 1023 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 SLC10A6Q3KNW5 377 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 SEZ6Q53EL9 994 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 POTEHQ6S545 545 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 SASS6Q6UVJ0 657 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 OTOP3Q7RTS5 596 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 MAML2Q8IZL2 1156 aaPredicted RBP9.48□□□□□ -0.89
TRIM28-214ENST00000600840 ENOX1Q8TC92 643 aaKnown RBP9.48□□□□□ -0.89
TRIM28-214ENST00000600840 PLEKHO2Q8TD55 490 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 NELFBQ8WX92 580 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 ACSF2Q96CM8 615 aaPredicted RBP9.48□□□□□ -0.89
TRIM28-214ENST00000600840 ZMAT2Q96NC0 199 aaKnown RBP9.48□□□□□ -0.89
TRIM28-214ENST00000600840 BPIFA3Q9BQP9 254 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 ADPGKQ9BRR6 497 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 RPP25Q9BUL9 199 aaKnown RBP9.48□□□□□ -0.89
TRIM28-214ENST00000600840 DNAJC25Q9H1X3 360 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 PCIF1Q9H4Z3 704 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 ANO10Q9NW15 660 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 HSPBP1Q9NZL4 362 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 DLGAP2Q9P1A6 1054 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 NCDNQ9UBB6 729 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 STK39Q9UEW8 545 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 ZFHX4Q86UP3 3567 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 PDCD11Q14690 1871 aaKnown RBP9.48□□□□□ -0.89
TRIM28-214ENST00000600840 CLUHO75153 1309 aa9.48□□□□□ -0.89
TRIM28-214ENST00000600840 ZNF292O60281 2723 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 SMIM28A0A1B0GU29 152 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 TTC26A0AVF1 554 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 PSMA7O14818 248 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 KIAA0391O15091 583 aaKnown RBP9.47□□□□□ -0.89
TRIM28-214ENST00000600840 MAPK13O15264 365 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 ZMYND10O75800 440 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 NR3C1P04150 777 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 HOXB3P14651 431 aaPredicted RBP9.47□□□□□ -0.89
TRIM28-214ENST00000600840 GLULP15104 373 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 TKTP29401 623 aaKnown RBP9.47□□□□□ -0.89
TRIM28-214ENST00000600840 GBP2P32456 591 aaPredicted RBP9.47□□□□□ -0.89
TRIM28-214ENST00000600840 ACOT2P49753 483 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 MARSP56192 900 aaKnown RBP9.47□□□□□ -0.89
TRIM28-214ENST00000600840 CLDN10P78369 228 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 LRRC63Q05C16 580 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 PAK1Q13153 545 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 NOLC1Q14978 699 aaKnown RBP eCLIP9.47□□□□□ -0.89
TRIM28-214ENST00000600840 ZBTB6Q15916 424 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 ENOX2Q16206 610 aaKnown RBP9.47□□□□□ -0.89
TRIM28-214ENST00000600840 PSMD5Q16401 504 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 STX1AQ16623 288 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 DCAF4L1Q3SXM0 396 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 C1orf220Q5T0J3 134 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 SCARA3Q6AZY7 606 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 ZC3H14Q6PJT7 736 aaKnown RBP9.47□□□□□ -0.89
TRIM28-214ENST00000600840 LRSAM1Q6UWE0 723 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 GAS2L3Q86XJ1 694 aa9.47□□□□□ -0.89
TRIM28-214ENST00000600840 CBWD2Q8IUF1 395 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms