RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 HOXA11P31270 313 aaPredicted RBP18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 RAP1GAPP47736 663 aa18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 GUCY2FP51841 1108 aa18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 CACNB2Q08289 660 aaPredicted RBP18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 KCTD19Q17RG1 926 aaPredicted RBP18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 DDX47Q9H0S4 455 aaKnown RBP18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 GDF3Q9NR23 364 aa18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 ANAPC7Q9UJX3 599 aa18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 MYL3P08590 195 aa18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 MYBL1P10243 752 aa18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 TNNT3P45378 269 aaPredicted RBP18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 PSEN2P49810 448 aa18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 ZNF200P98182 395 aaPredicted RBP18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 GUCY2DQ02846 1103 aa18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 PTP4A2Q12974 167 aa18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 TRADDQ15628 312 aa18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 TFAP2BQ92481 460 aa18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 CXCL16Q9H2A7 254 aa18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 ASB7Q9H672 318 aa18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 EPB41L5Q9HCM4 733 aa18.16■□□□□ 0.5
SHKBP1-216ENST00000598201 HAS3O00219 553 aa18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 SART1O43290 800 aaKnown RBP18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 SPOPO43791 374 aa18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 INHAP05111 366 aa18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 CYP2C9P11712 490 aa18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 ADAM17P78536 824 aa18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 SMC1AQ14683 1233 aaKnown RBP18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 WDR72Q3MJ13 1102 aa18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 MMS22LQ6ZRQ5 1243 aa18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 ADAT2Q7Z6V5 191 aaKnown RBP18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 PHF13Q86YI8 300 aaPredicted RBP18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 UBL4BQ8N7F7 174 aa18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 OSMRQ99650 979 aa18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 SDCBP2Q9H190 292 aa18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 WNT8AQ9H1J5 351 aa18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 ADAM22Q9P0K1 906 aa18.15■□□□□ 0.5
SHKBP1-216ENST00000598201 SMIM35A0A1B0GVV1 85 aa18.14■□□□□ 0.5
SHKBP1-216ENST00000598201 PRKAR2AP13861 404 aaKnown RBP18.14■□□□□ 0.5
SHKBP1-216ENST00000598201 TNFRSF8P28908 595 aa18.14■□□□□ 0.5
SHKBP1-216ENST00000598201 CTNNA1P35221 906 aaKnown RBP18.14■□□□□ 0.5
SHKBP1-216ENST00000598201 CARSP49589 748 aaKnown RBP18.14■□□□□ 0.5
SHKBP1-216ENST00000598201 CDH8P55286 799 aa18.14■□□□□ 0.5
SHKBP1-216ENST00000598201 POU5F1Q01860 360 aaKnown RBP18.14■□□□□ 0.5
SHKBP1-216ENST00000598201 TRIM11Q96F44 468 aa18.14■□□□□ 0.5
SHKBP1-216ENST00000598201 ACAP3Q96P50 834 aa18.14■□□□□ 0.5
SHKBP1-216ENST00000598201 BCO2Q9BYV7 579 aa18.14■□□□□ 0.5
SHKBP1-216ENST00000598201 CCDC188H7C350 402 aa18.14■□□□□ 0.49
SHKBP1-216ENST00000598201 TREHO43280 583 aa18.14■□□□□ 0.49
SHKBP1-216ENST00000598201 NPTXRO95502 500 aa18.14■□□□□ 0.49
SHKBP1-216ENST00000598201 CPT1AP50416 773 aa18.14■□□□□ 0.49
SHKBP1-216ENST00000598201 TMEM132DQ14C87 1099 aa18.14■□□□□ 0.49
SHKBP1-216ENST00000598201 ZNF667Q5HYK9 610 aa18.14■□□□□ 0.49
SHKBP1-216ENST00000598201 MAP3K21Q5TCX8 1036 aa18.14■□□□□ 0.49
SHKBP1-216ENST00000598201 TRPV1Q8NER1 839 aa18.14■□□□□ 0.49
SHKBP1-216ENST00000598201 DNAJB3Q8WWF6 145 aa18.14■□□□□ 0.49
SHKBP1-216ENST00000598201 CASKIN2Q8WXE0 1202 aa18.14■□□□□ 0.49
SHKBP1-216ENST00000598201 ADPGKQ9BRR6 497 aa18.14■□□□□ 0.49
SHKBP1-216ENST00000598201 GCOM2Q9BZD3 368 aaPredicted RBP18.14■□□□□ 0.49
SHKBP1-216ENST00000598201 MCOLN1Q9GZU1 580 aa18.14■□□□□ 0.49
SHKBP1-216ENST00000598201 AP5M1Q9H0R1 490 aa18.14■□□□□ 0.49
SHKBP1-216ENST00000598201 ERVK-5Q9HDB9 667 aa18.14■□□□□ 0.49
SHKBP1-216ENST00000598201 H3BQF6 201 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 PYGMP11217 842 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 CYBAP13498 195 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 CTNNA2P26232 953 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 POLR2BP30876 1174 aaKnown RBP18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 KYAT1Q16773 422 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 CATSPER4Q7RTX7 472 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 IFT20Q8IY31 132 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 EIF2AQ9BY44 585 aaKnown RBP18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 SMYD3Q9H7B4 428 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 AMACRQ9UHK6 382 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 PCDHA3Q9Y5H8 950 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 GJB6O95452 261 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 GRM5P41594 1212 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 MAMLD1Q13495 774 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 WDTC1Q8N5D0 677 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 C1orf131Q8NDD1 294 aaKnown RBP18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 TMEM40Q8WWA1 233 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 VCPIP1Q96JH7 1222 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 Q9Y3F1 56 aa18.13■□□□□ 0.49
SHKBP1-216ENST00000598201 CCDC66A2RUB6 948 aa18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 MYADML2A6NDP7 307 aa18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 DARSP14868 501 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 MMP8P22894 467 aa18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 C1QBPQ07021 282 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 PDE4CQ08493 712 aa18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 ORC1Q13415 861 aa18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 FSCN1Q16658 493 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 LIN9Q5TKA1 542 aa18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 DAB2IPQ5VWQ8 1189 aa18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 PLEKHA7Q6IQ23 1121 aa18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 SND1Q7KZF4 910 aaKnown RBP eCLIP18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 ZDHHC14Q8IZN3 488 aa18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 WHAMMQ8TF30 809 aa18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 IFT81Q8WYA0 676 aa18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 HMGXB4Q9UGU5 601 aa18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 HPCAL4Q9UM19 191 aa18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 NFU1Q9UMS0 254 aa18.12■□□□□ 0.49
SHKBP1-216ENST00000598201 AGAP1Q9UPQ3 857 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms