RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 CSGALNACT1Q8TDX6 532 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 KIF12Q96FN5 646 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 PLIN2Q99541 437 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 C8orf33Q9H7E9 229 aaPredicted RBP13.61□□□□□ -0.23
TRIM28-212ENST00000597995 LARSQ9P2J5 1176 aaKnown RBP13.61□□□□□ -0.23
TRIM28-212ENST00000597995 USP18Q9UMW8 372 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 ASB3Q9Y575 518 aa13.61□□□□□ -0.23
TRIM28-212ENST00000597995 TICRRQ7Z2Z1 1910 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 TPRP12270 2363 aaKnown RBP13.6□□□□□ -0.23
TRIM28-212ENST00000597995 LRP3O75074 770 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 PAPSS2O95340 614 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-212ENST00000597995 VNN2O95498 520 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 FGF19O95750 216 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 ADRB2P07550 413 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 RETP07949 1114 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 TYMPP19971 482 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 SCP2P22307 547 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 CNR2P34972 360 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 ALDH1A3P47895 512 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 SLC12A3P55017 1021 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 DUSP4Q13115 394 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 MYBPC2Q14324 1141 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 LRRC32Q14392 662 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 TMEM119Q4V9L6 283 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 CENPPQ6IPU0 288 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 DSTYKQ6XUX3 929 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 TMC8Q8IU68 726 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 HAPLN2Q9GZV7 340 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 DNAJC25Q9H1X3 360 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 SLITRK6Q9H5Y7 841 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 PARD6AQ9NPB6 346 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 HSFX1Q9UBD0 423 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 TIMM13Q9Y5L4 95 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-212ENST00000597995 NCANO14594 1321 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 MYH11P35749 1972 aa13.6□□□□□ -0.23
TRIM28-212ENST00000597995 SPTBN2O15020 2390 aa13.59□□□□□ -0.23
TRIM28-212ENST00000597995 A0A1W2PRU2 124 aa13.59□□□□□ -0.23
TRIM28-212ENST00000597995 OR4Q2P0C623 313 aa13.59□□□□□ -0.23
TRIM28-212ENST00000597995 MATR3P43243 847 aaKnown RBP eCLIP13.59□□□□□ -0.23
TRIM28-212ENST00000597995 NCKAP1LP55160 1127 aa13.59□□□□□ -0.23
TRIM28-212ENST00000597995 SATB1Q01826 763 aa13.59□□□□□ -0.23
TRIM28-212ENST00000597995 PPP2R3AQ06190 1150 aa13.59□□□□□ -0.23
TRIM28-212ENST00000597995 RAD51AP2Q09MP3 1159 aa13.59□□□□□ -0.23
TRIM28-212ENST00000597995 GAS6Q14393 721 aa13.59□□□□□ -0.23
TRIM28-212ENST00000597995 SF3A1Q15459 793 aaKnown RBP13.59□□□□□ -0.23
TRIM28-212ENST00000597995 ZRSR1Q15695 479 aaKnown RBP13.59□□□□□ -0.23
TRIM28-212ENST00000597995 DGKKQ5KSL6 1271 aa13.59□□□□□ -0.23
TRIM28-212ENST00000597995 ARID3BQ8IVW6 561 aaPredicted RBP13.59□□□□□ -0.23
TRIM28-212ENST00000597995 CD302Q8IX05 232 aa13.59□□□□□ -0.23
TRIM28-212ENST00000597995 PSMG2Q969U7 264 aa13.59□□□□□ -0.23
TRIM28-212ENST00000597995 RSPRY1Q96DX4 576 aa13.59□□□□□ -0.23
TRIM28-212ENST00000597995 PGLYRP2Q96PD5 576 aa13.59□□□□□ -0.23
TRIM28-212ENST00000597995 CRISPLD1Q9H336 500 aa13.59□□□□□ -0.23
TRIM28-212ENST00000597995 OBP2AQ9NY56 170 aa13.59□□□□□ -0.23
TRIM28-212ENST00000597995 MYBPHLA2RUH7 354 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 VPS37CA5D8V6 355 aaPredicted RBP13.58□□□□□ -0.24
TRIM28-212ENST00000597995 LACTBL1A8MY62 500 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 SLC26A4O43511 780 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 PIGRP01833 764 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 PLA2G4BP0C869 781 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 SYT1P21579 422 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 WEE1P30291 646 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 HOXA6P31267 233 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 KPNA1P52294 538 aaPredicted RBP13.58□□□□□ -0.24
TRIM28-212ENST00000597995 SPAG1Q07617 926 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 RESTQ13127 1097 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 SIM2Q14190 667 aaPredicted RBP13.58□□□□□ -0.24
TRIM28-212ENST00000597995 PTPAQ15257 358 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 ARHGAP29Q52LW3 1261 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 ARSHQ5FYA8 562 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 SPATA1Q5VX52 437 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 OVOS1Q6IE37 1185 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 FAM173BQ6P4H8 233 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 HAUS6Q7Z4H7 955 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 BRAPQ7Z569 592 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 DNAJB7Q7Z6W7 309 aaPredicted RBP13.58□□□□□ -0.24
TRIM28-212ENST00000597995 ITIH5Q86UX2 942 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 RALGPS2Q86X27 583 aaPredicted RBP13.58□□□□□ -0.24
TRIM28-212ENST00000597995 BICD1Q96G01 975 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 MKNK1Q9BUB5 465 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 RPF1Q9H9Y2 349 aaKnown RBP13.58□□□□□ -0.24
TRIM28-212ENST00000597995 ODF2LQ9ULJ1 636 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 CLIC4Q9Y696 253 aa13.58□□□□□ -0.24
TRIM28-212ENST00000597995 CACNA1BQ00975 2339 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 NPHP3-ACAD11A0A0J9YXS1 232 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 MTMR11A4FU01 709 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 SPECC1L-ADORA2AF8WAN1 911 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 DPYSL4O14531 572 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 OGTO15294 1046 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 HRO43593 1189 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 FAM189A1O60320 539 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 FOXD2O60548 495 aaPredicted RBP13.57□□□□□ -0.24
TRIM28-212ENST00000597995 CTHP32929 405 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 TNFSF9P41273 254 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 LIG4P49917 911 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 LILRA4P59901 499 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 SPEM2Q0P670 501 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 ENOX2Q16206 610 aaKnown RBP13.57□□□□□ -0.24
TRIM28-212ENST00000597995 ARHGAP15Q53QZ3 475 aa13.57□□□□□ -0.24
TRIM28-212ENST00000597995 ARMCX5Q6P1M9 558 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms