RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 ADSSL1Q8N142 457 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 TRIML1Q8N9V2 468 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 KREMEN2Q8NCW0 462 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 ZNF461Q8TAF7 563 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 TMC2Q8TDI7 906 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 PARD3BQ8TEW8 1205 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 RIPOR3Q96MK2 946 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 UHRF1Q96T88 793 aaPredicted RBP12.82□□□□□ -0.36
LIG3-213ENST00000590630 POP1Q99575 1024 aaKnown RBP12.82□□□□□ -0.36
LIG3-213ENST00000590630 TSG101Q99816 390 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 RHOBTB2Q9BYZ6 727 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 GZF1Q9H116 711 aaPredicted RBP12.82□□□□□ -0.36
LIG3-213ENST00000590630 LMBRD1Q9NUN5 540 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 ZDHHC7Q9NXF8 308 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 GDAP2Q9NXN4 497 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 TIMM13Q9Y5L4 95 aaPredicted RBP12.82□□□□□ -0.36
LIG3-213ENST00000590630 OR6C75A6NL08 312 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 IKBKBO14920 756 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 AKAP3O75969 853 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 ABLIM3O94929 683 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 HOXA9P31269 272 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 PSMC2P35998 433 aaKnown RBP12.81□□□□□ -0.36
LIG3-213ENST00000590630 MTHFRP42898 656 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 MORC3Q14149 939 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 CAMK4Q16566 473 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 UVSSAQ2YD98 709 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 ATAT1Q5SQI0 421 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 TPGS2Q68CL5 300 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 TMC5Q6UXY8 1006 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 INTS8Q75QN2 995 aaKnown RBP12.81□□□□□ -0.36
LIG3-213ENST00000590630 GPR149Q86SP6 731 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 METTL23Q86XA0 190 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 ADHFE1Q8IWW8 467 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 C12orf76Q8N812 135 aaPredicted RBP12.81□□□□□ -0.36
LIG3-213ENST00000590630 BORCS6Q96GS4 357 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 DHTKD1Q96HY7 919 aaPredicted RBP12.81□□□□□ -0.36
LIG3-213ENST00000590630 HPDLQ96IR7 371 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 FAM84AQ96KN4 292 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 MKNK1Q9BUB5 465 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 APOL5Q9BWW9 433 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 COL25A1Q9BXS0 654 aaPredicted RBP12.81□□□□□ -0.36
LIG3-213ENST00000590630 KIAA1468Q9P260 1216 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 MAFFQ9ULX9 164 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 DOCK6Q96HP0 2047 aa12.81□□□□□ -0.36
LIG3-213ENST00000590630 CCDC195A0A1B0GUA6 201 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 WDR27A2RRH5 827 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 LRRIQ3A6PVS8 624 aaPredicted RBP12.8□□□□□ -0.36
LIG3-213ENST00000590630 CETN3O15182 167 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 HUS1O60921 280 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 ZMYND10O75800 440 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 C8AP07357 584 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 HNRNPA1P09651 372 aaKnown RBP eCLIP12.8□□□□□ -0.36
LIG3-213ENST00000590630 KRT13P13646 458 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 CPB1P15086 417 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 ATF2P15336 505 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 BMP6P22004 513 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 FKBP3Q00688 224 aaKnown RBP12.8□□□□□ -0.36
LIG3-213ENST00000590630 ZP2Q05996 745 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 BFSP1Q12934 665 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 ISM2Q6H9L7 571 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 FOXR2Q6PJQ5 311 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 CCDC149Q6ZUS6 474 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 FAM186BQ8IYM0 893 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 TMEM86AQ8N2M4 240 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 TOP6BLQ8N6T0 577 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 SPATA18Q8TC71 538 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 PLEKHO2Q8TD55 490 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 ZNF516Q92618 1163 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 PHF7Q9BWX1 381 aaPredicted RBP12.8□□□□□ -0.36
LIG3-213ENST00000590630 CLSTN2Q9H4D0 955 aa12.8□□□□□ -0.36
LIG3-213ENST00000590630 BIN1O00499 593 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 SLC16A3O15427 465 aaKnown RBP12.79□□□□□ -0.36
LIG3-213ENST00000590630 PHACTR2O75167 634 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 RFPL2O75678 378 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 STAU1O95793 577 aaKnown RBP12.79□□□□□ -0.36
LIG3-213ENST00000590630 POU2F2P09086 479 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 EPB41P11171 864 aaKnown RBP12.79□□□□□ -0.36
LIG3-213ENST00000590630 CCNE1P24864 410 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 ATICP31939 592 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 ELF1P32519 619 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 VAMP7P51809 220 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 ARPP19P56211 112 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 BIRC3Q13489 604 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 TRPC3Q13507 836 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 PPM1LQ5SGD2 360 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 TDRD10Q5VZ19 366 aaKnown RBP12.79□□□□□ -0.36
LIG3-213ENST00000590630 WSCD1Q658N2 575 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 ANKRD40Q6AI12 368 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 DPH6Q7L8W6 267 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 ZC3H3Q8IXZ2 948 aaKnown RBP12.79□□□□□ -0.36
LIG3-213ENST00000590630 TCEAL8Q8IYN2 117 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 THEM5Q8N1Q8 247 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 PDCL2Q8N4E4 241 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 SLC7A14Q8TBB6 771 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 SYAP1Q96A49 352 aaPredicted RBP12.79□□□□□ -0.36
LIG3-213ENST00000590630 ZNF707Q96C28 371 aaPredicted RBP12.79□□□□□ -0.36
LIG3-213ENST00000590630 NECAB3Q96P71 396 aaPredicted RBP12.79□□□□□ -0.36
LIG3-213ENST00000590630 PRKD2Q9BZL6 878 aa12.79□□□□□ -0.36
LIG3-213ENST00000590630 AFF4Q9UHB7 1163 aaKnown RBP12.79□□□□□ -0.36
LIG3-213ENST00000590630 SNX9Q9Y5X1 595 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms