RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 CACNB1Q02641 598 aaPredicted RBP12.9□□□□□ -0.34
LIG3-209ENST00000586435 SPAG1Q07617 926 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 FCHO2Q0JRZ9 810 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 PPP2R5DQ14738 602 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 RABEP1Q15276 862 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 TEAD2Q15562 447 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 ENOX2Q16206 610 aaKnown RBP12.9□□□□□ -0.34
LIG3-209ENST00000586435 MCTP1Q6DN14 999 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 TSSK4Q6SA08 328 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 CD302Q8IX05 232 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 REEP2Q9BRK0 252 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 DNAJC25Q9H1X3 360 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 CRISPLD1Q9H336 500 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 TBX20Q9UMR3 447 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 NDRG2Q9UN36 371 aaKnown RBP12.9□□□□□ -0.34
LIG3-209ENST00000586435 ASB3Q9Y575 518 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 TIMM13Q9Y5L4 95 aaPredicted RBP12.9□□□□□ -0.34
LIG3-209ENST00000586435 RALGAPA1Q6GYQ0 2036 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 OBSL1O75147 1896 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 NPHP3-ACAD11A0A0J9YXS1 232 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 MTMR11A4FU01 709 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 HEPACAM2A8MVW5 462 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 LACTBL1A8MY62 500 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 CHADO15335 359 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 OR4Q2P0C623 313 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 EPHB3P54753 998 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 DUSP4Q13115 394 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 C8orf34Q49A92 452 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 SPATA1Q5VX52 437 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 OVOS1Q6IE37 1185 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 CENPPQ6IPU0 288 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 DSTYKQ6XUX3 929 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 TMEM130Q8N3G9 435 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 PGLYRP2Q96PD5 576 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 PLIN2Q99541 437 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 SLITRK6Q9H5Y7 841 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 RPF1Q9H9Y2 349 aaKnown RBP12.89□□□□□ -0.35
LIG3-209ENST00000586435 PARVGQ9HBI0 331 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 OBP2AQ9NY56 170 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 DERAQ9Y315 318 aa12.89□□□□□ -0.35
LIG3-209ENST00000586435 ZNF638Q14966 1978 aaKnown RBP12.89□□□□□ -0.35
LIG3-209ENST00000586435 A0A0B4J269 797 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 A0A1W2PRU2 124 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 PRR5-ARHGAP8B1AHC4 643 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 K7ENM7 598 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 PAPSS2O95340 614 aaPredicted RBP12.88□□□□□ -0.35
LIG3-209ENST00000586435 FGF19O95750 216 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 CYP11A1P05108 521 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 CHRNB1P11230 501 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 ODC1P11926 461 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 WEE1P30291 646 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 ALDH1A3P47895 512 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 LILRA4P59901 499 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 ARHGAP8P85298 464 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 LMNB2Q03252 620 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 RSPO4Q2I0M5 234 aaPredicted RBP12.88□□□□□ -0.35
LIG3-209ENST00000586435 GPBP1Q86WP2 473 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 PSMG2Q969U7 264 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 RSPRY1Q96DX4 576 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 CALML4Q96GE6 196 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 FIZ1Q96SL8 496 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 MKNK1Q9BUB5 465 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 C8orf33Q9H7E9 229 aaPredicted RBP12.88□□□□□ -0.35
LIG3-209ENST00000586435 LMAN1LQ9HAT1 526 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 BLOC1S4Q9NUP1 217 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 GMEB2Q9UKD1 530 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 CPSF3Q9UKF6 684 aaKnown RBP12.88□□□□□ -0.35
LIG3-209ENST00000586435 SPTBN2O15020 2390 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 SPAG17Q6Q759 2223 aa12.88□□□□□ -0.35
LIG3-209ENST00000586435 ANO9A1A5B4 782 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 H3BQV1 296 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 PIRO00625 290 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 PPEF2O14830 753 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 TRAK2O60296 914 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 FAM13AO94988 1023 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 BMP15O95972 392 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 TGM1P22735 817 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 CCNE1P24864 410 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 GJB2P29033 226 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 UBA7P41226 1012 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 GUCY2FP51841 1108 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 GTF2BQ00403 316 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 POU5F1Q01860 360 aaKnown RBP12.87□□□□□ -0.35
LIG3-209ENST00000586435 LRRC32Q14392 662 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 C9orf57Q5W0N0 161 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 JADE1Q6IE81 842 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 ARMCX5Q6P1M9 558 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 SLC39A4Q6P5W5 647 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 GAREM2Q75VX8 874 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 DNAJB7Q7Z6W7 309 aaPredicted RBP12.87□□□□□ -0.35
LIG3-209ENST00000586435 ITIH5Q86UX2 942 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 ARID3BQ8IVW6 561 aaPredicted RBP12.87□□□□□ -0.35
LIG3-209ENST00000586435 YAF2Q8IY57 180 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 SPEM1Q8N4L4 309 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 MYCT1Q8N699 235 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 CELF5Q8N6W0 485 aaKnown RBP12.87□□□□□ -0.35
LIG3-209ENST00000586435 CSGALNACT1Q8TDX6 532 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 LRRC15Q8TF66 581 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 TMX3Q96JJ7 454 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 SENP8Q96LD8 212 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms