RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TREHO43280 583 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 CALCAP01258 141 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 MMP8P22894 467 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 PEX5P50542 639 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 TMEM62Q0P6H9 643 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 MYO1EQ12965 1108 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 NOGQ13253 232 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 SNX17Q15036 470 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 DCAF12L1Q5VU92 463 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 SCARA5Q6ZMJ2 495 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 KIF12Q96FN5 646 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 TRIM6Q9C030 488 aaPredicted RBP15.09■□□□□ 0.01
LIG3-205ENST00000585941 LHX5Q9H2C1 402 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 GPBP1L1Q9HC44 474 aaPredicted RBP15.09■□□□□ 0.01
LIG3-205ENST00000585941 GDF3Q9NR23 364 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 KIAA1257Q9ULG3 409 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.09■□□□□ 0.01
LIG3-205ENST00000585941 SPDYE4A6NLX3 237 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 HEXIM1O94992 359 aaKnown RBP15.09■□□□□ 0.01
LIG3-205ENST00000585941 C6orf222P0C671 652 aaPredicted RBP15.09■□□□□ 0.01
LIG3-205ENST00000585941 CTGFP29279 349 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 POLR2BP30876 1174 aaKnown RBP15.09■□□□□ 0.01
LIG3-205ENST00000585941 EPHB4P54760 987 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 RWDD2BP57060 319 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 CASP8Q14790 479 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 SCARA3Q6AZY7 606 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 EMBQ6PCB8 327 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 PASD1Q8IV76 773 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.09■□□□□ 0.01
LIG3-205ENST00000585941 HDAC7Q8WUI4 952 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 ALG3Q92685 438 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 SNX27Q96L92 541 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 C11orf70Q9BRQ4 267 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 STRIP2Q9ULQ0 834 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 POLIQ9UNA4 740 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 AGAP1Q9UPQ3 857 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 TRIP11Q15643 1979 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 SCN10AQ9Y5Y9 1956 aa15.09■□□□□ 0.01
LIG3-205ENST00000585941 SART1O43290 800 aaKnown RBP15.08■□□□□ 0
LIG3-205ENST00000585941 XPOTO43592 962 aaKnown RBP15.08■□□□□ 0
LIG3-205ENST00000585941 SASH3O75995 380 aa15.08■□□□□ 0
LIG3-205ENST00000585941 PROSCO94903 275 aa15.08■□□□□ 0
LIG3-205ENST00000585941 FGFR4P22455 802 aa15.08■□□□□ 0
LIG3-205ENST00000585941 BRD2P25440 801 aaKnown RBP15.08■□□□□ 0
LIG3-205ENST00000585941 MAN1A1P33908 653 aa15.08■□□□□ 0
LIG3-205ENST00000585941 SLC7A5Q01650 507 aa15.08■□□□□ 0
LIG3-205ENST00000585941 PTP4A2Q12974 167 aa15.08■□□□□ 0
LIG3-205ENST00000585941 PAK2Q13177 524 aa15.08■□□□□ 0
LIG3-205ENST00000585941 NNTQ13423 1086 aa15.08■□□□□ 0
LIG3-205ENST00000585941 MAMLD1Q13495 774 aa15.08■□□□□ 0
LIG3-205ENST00000585941 GNASQ5JWF2 1037 aa15.08■□□□□ 0
LIG3-205ENST00000585941 MMS22LQ6ZRQ5 1243 aa15.08■□□□□ 0
LIG3-205ENST00000585941 RSPH3Q86UC2 560 aa15.08■□□□□ 0
LIG3-205ENST00000585941 KLHL7Q8IXQ5 586 aa15.08■□□□□ 0
LIG3-205ENST00000585941 TRPV1Q8NER1 839 aa15.08■□□□□ 0
LIG3-205ENST00000585941 BEST2Q8NFU1 509 aa15.08■□□□□ 0
LIG3-205ENST00000585941 AENQ8WTP8 325 aaKnown RBP15.08■□□□□ 0
LIG3-205ENST00000585941 AP1M1Q9BXS5 423 aa15.08■□□□□ 0
LIG3-205ENST00000585941 CDHR5Q9HBB8 845 aa15.08■□□□□ 0
LIG3-205ENST00000585941 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.08■□□□□ 0
LIG3-205ENST00000585941 CHORDC1Q9UHD1 332 aaPredicted RBP15.08■□□□□ 0
LIG3-205ENST00000585941 PDCD11Q14690 1871 aaKnown RBP15.08■□□□□ 0
LIG3-205ENST00000585941 FAM170AA1A519 330 aa15.07■□□□□ 0
LIG3-205ENST00000585941 M0QZ92 97 aa15.07■□□□□ 0
LIG3-205ENST00000585941 SEPT4O43236 478 aa15.07■□□□□ 0
LIG3-205ENST00000585941 CILPO75339 1184 aa15.07■□□□□ 0
LIG3-205ENST00000585941 CFHP08603 1231 aa15.07■□□□□ 0
LIG3-205ENST00000585941 RARBP10826 455 aa15.07■□□□□ 0
LIG3-205ENST00000585941 ATF7P17544 494 aaPredicted RBP15.07■□□□□ 0
LIG3-205ENST00000585941 FLT3LGP49771 235 aa15.07■□□□□ 0
LIG3-205ENST00000585941 RAD23BP54727 409 aa15.07■□□□□ 0
LIG3-205ENST00000585941 INCA1Q0VD86 236 aa15.07■□□□□ 0
LIG3-205ENST00000585941 CUL1Q13616 776 aa15.07■□□□□ 0
LIG3-205ENST00000585941 HIC1Q14526 733 aa15.07■□□□□ 0
LIG3-205ENST00000585941 ZBTB6Q15916 424 aa15.07■□□□□ 0
LIG3-205ENST00000585941 ZNF394Q53GI3 561 aa15.07■□□□□ 0
LIG3-205ENST00000585941 PAXIP1Q6ZW49 1069 aaPredicted RBP15.07■□□□□ 0
LIG3-205ENST00000585941 ERICH1Q86X53 443 aa15.07■□□□□ 0
LIG3-205ENST00000585941 LRRC52Q8N7C0 313 aa15.07■□□□□ 0
LIG3-205ENST00000585941 MAIP1Q8WWC4 291 aa15.07■□□□□ 0
LIG3-205ENST00000585941 TRIB2Q92519 343 aa15.07■□□□□ 0
LIG3-205ENST00000585941 KRT35Q92764 455 aa15.07■□□□□ 0
LIG3-205ENST00000585941 RUNDC3BQ96NL0 473 aa15.07■□□□□ 0
LIG3-205ENST00000585941 SNTG2Q9NY99 539 aa15.07■□□□□ 0
LIG3-205ENST00000585941 CNTN3Q9P232 1028 aa15.07■□□□□ 0
LIG3-205ENST00000585941 IP6K2Q9UHH9 426 aa15.07■□□□□ 0
LIG3-205ENST00000585941 MTUS1Q9ULD2 1270 aa15.07■□□□□ 0
LIG3-205ENST00000585941 PIN4Q9Y237 131 aaKnown RBP15.07■□□□□ 0
LIG3-205ENST00000585941 TLR3O15455 904 aaKnown RBP15.06■□□□□ 0
LIG3-205ENST00000585941 RAD51CO43502 376 aa15.06■□□□□ 0
LIG3-205ENST00000585941 ZMYND10O75800 440 aa15.06■□□□□ 0
LIG3-205ENST00000585941 CD4P01730 458 aa15.06■□□□□ 0
LIG3-205ENST00000585941 CD19P15391 556 aa15.06■□□□□ 0
LIG3-205ENST00000585941 TNNT3P45378 269 aaPredicted RBP15.06■□□□□ 0
LIG3-205ENST00000585941 PLA2G4AP47712 749 aa15.06■□□□□ 0
LIG3-205ENST00000585941 IRX5P78411 483 aaPredicted RBP15.06■□□□□ 0
LIG3-205ENST00000585941 GUCY2DQ02846 1103 aa15.06■□□□□ 0
LIG3-205ENST00000585941 STILQ15468 1287 aa15.06■□□□□ 0
LIG3-205ENST00000585941 ALKAL1Q6UXT8 129 aa15.06■□□□□ 0
LIG3-205ENST00000585941 FEZF2Q8TBJ5 459 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms