RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 YARSP54577 528 aaKnown RBP11.11□□□□□ -0.63
LIG3-203ENST00000585370 CHMP4BP1P59074 171 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 GPC5P78333 572 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 PTPN11Q06124 597 aaPredicted RBP11.11□□□□□ -0.63
LIG3-203ENST00000585370 KIZQ2M2Z5 673 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 SEZ6Q53EL9 994 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 PPP2R2DQ66LE6 453 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 NOP9Q86U38 636 aaKnown RBP11.11□□□□□ -0.63
LIG3-203ENST00000585370 DNAJB3Q8WWF6 145 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 ATXN2LQ8WWM7 1075 aaKnown RBP11.11□□□□□ -0.63
LIG3-203ENST00000585370 RFFLQ8WZ73 363 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 GOLGA1Q92805 767 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 KAT5Q92993 513 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 TRIM11Q96F44 468 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 NIF3L1Q9GZT8 377 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 VRTNQ9H8Y1 702 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 CYP3A43Q9HB55 503 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 SEPT11Q9NVA2 429 aaKnown RBP11.11□□□□□ -0.63
LIG3-203ENST00000585370 SNX12Q9UMY4 172 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 TFR2Q9UP52 801 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 HYOU1Q9Y4L1 999 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 PCDHB4Q9Y5E5 795 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 PCDHA11Q9Y5I1 949 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 PTPRJQ12913 1337 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 CTAGE15A4D2H0 777 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 XPOTO43592 962 aaKnown RBP11.1□□□□□ -0.63
LIG3-203ENST00000585370 BUB1O43683 1085 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 CST3P01034 146 aaPredicted RBP11.1□□□□□ -0.63
LIG3-203ENST00000585370 ATP1A1P05023 1023 aaKnown RBP11.1□□□□□ -0.63
LIG3-203ENST00000585370 CTAGE8P0CG41 777 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 CXCL8P10145 99 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 MYBL1P10243 752 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 CHRNB2P17787 502 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 ACO1P21399 889 aaKnown RBP11.1□□□□□ -0.63
LIG3-203ENST00000585370 HOXA11P31270 313 aaPredicted RBP11.1□□□□□ -0.63
LIG3-203ENST00000585370 RFC2P35250 354 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 MYL6P60660 151 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 RBP5P82980 135 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 ITIH3Q06033 890 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 GPNMBQ14956 572 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 TMEM132DQ14C87 1099 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 PTGISQ16647 500 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 ZNF699Q32M78 642 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 SLC10A6Q3KNW5 377 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 ZNF667Q5HYK9 610 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 MEI1Q5TIA1 1274 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 ACAD10Q6JQN1 1059 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 RUFY4Q6ZNE9 571 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 MTERF4Q7Z6M4 381 aaKnown RBP11.1□□□□□ -0.63
LIG3-203ENST00000585370 CTAGE6Q86UF2 777 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 SLC47A2Q86VL8 602 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 GPIHBP1Q8IV16 184 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 CTAGE4Q8IX94 777 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 OLIG1Q8TAK6 271 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 DDX1Q92499 740 aaKnown RBP11.1□□□□□ -0.63
LIG3-203ENST00000585370 RABGGTAQ92696 567 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 CPB2Q96IY4 423 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 VCPIP1Q96JH7 1222 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 ASB2Q96Q27 587 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 PACSIN1Q9BY11 444 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 CELF4Q9BZC1 486 aaKnown RBP11.1□□□□□ -0.63
LIG3-203ENST00000585370 MTMR12Q9C0I1 747 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 APOBEC3GQ9HC16 384 aaKnown RBP11.1□□□□□ -0.63
LIG3-203ENST00000585370 GTF2IRD1Q9UHL9 959 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 SALL4Q9UJQ4 1053 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 ITGA11Q9UKX5 1188 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 NUB1Q9Y5A7 615 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 CAPN6Q9Y6Q1 641 aa11.1□□□□□ -0.63
LIG3-203ENST00000585370 RFXAPO00287 272 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 TADA3O75528 432 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 CSDE1O75534 798 aaKnown RBP11.09□□□□□ -0.63
LIG3-203ENST00000585370 PALMO75781 387 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 MTA2O94776 668 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 CA3P07451 260 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 PAFAH1B1P43034 410 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 OSTNP61366 133 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 MRPS6P82932 125 aaKnown RBP11.09□□□□□ -0.63
LIG3-203ENST00000585370 FMO1Q01740 532 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 RPS6KA1Q15418 735 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 CLEC16AQ2KHT3 1053 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 JADE1Q6IE81 842 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 GDF6Q6KF10 455 aaPredicted RBP11.09□□□□□ -0.63
LIG3-203ENST00000585370 FAM43BQ6ZT52 329 aaPredicted RBP11.09□□□□□ -0.63
LIG3-203ENST00000585370 RSRC2Q7L4I2 434 aaKnown RBP11.09□□□□□ -0.63
LIG3-203ENST00000585370 SLFN11Q7Z7L1 901 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 EFCAB13Q8IY85 973 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 GPR161Q8N6U8 529 aaKnown RBP11.09□□□□□ -0.63
LIG3-203ENST00000585370 UBR7Q8N806 425 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 CEP120Q8N960 986 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 TPCN2Q8NHX9 752 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 SLC35G2Q8TBE7 412 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 SLC20A1Q8WUM9 679 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 PBKQ96KB5 322 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 PPP1R16BQ96T49 567 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 OSMRQ99650 979 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 SELENOOQ9BVL4 669 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 TRIM6Q9C030 488 aaPredicted RBP11.09□□□□□ -0.63
LIG3-203ENST00000585370 ZNF518BQ9C0D4 1074 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 PDCL3Q9H2J4 239 aa11.09□□□□□ -0.63
LIG3-203ENST00000585370 CHST12Q9NRB3 414 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms