RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 TCP11X1B4DZS4 312 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 MAFGO15525 162 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 GAS8O95995 478 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 CDR1P51861 262 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 OGDHQ02218 1023 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 P3H1Q32P28 736 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 KCNT1Q5JUK3 1230 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 LIN9Q5TKA1 542 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 IZUMO3Q5VZ72 239 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 MFSD7Q6UXD7 560 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 NCAPG2Q86XI2 1143 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 PAIP2Q9BPZ3 127 aaKnown RBP11.12□□□□□ -0.63
TOP3A-209ENST00000580095 DHX33Q9H6R0 707 aaKnown RBP11.12□□□□□ -0.63
TOP3A-209ENST00000580095 AS3MTQ9HBK9 375 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 SLC40A1Q9NP59 571 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 NXF1Q9UBU9 619 aaKnown RBP11.12□□□□□ -0.63
TOP3A-209ENST00000580095 TTC4O95801 387 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 ITGBL1O95965 494 aaPredicted RBP11.12□□□□□ -0.63
TOP3A-209ENST00000580095 IFNB1P01574 187 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 RAP1GAPP47736 663 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 SCTRP47872 440 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 PLCB3Q01970 1234 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 ZNF252P-AS1Q0IIN9 211 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 KLF1Q13351 362 aaPredicted RBP11.12□□□□□ -0.63
TOP3A-209ENST00000580095 SYCP2LQ5T4T6 812 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 ENOSF1Q7L5Y1 443 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 SPATS2Q86XZ4 545 aaKnown RBP11.12□□□□□ -0.63
TOP3A-209ENST00000580095 RHOT1Q8IXI2 618 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 ATL2Q8NHH9 583 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 TFAP2BQ92481 460 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 AVENQ9NQS1 362 aaPredicted RBP11.12□□□□□ -0.63
TOP3A-209ENST00000580095 ABCF3Q9NUQ8 709 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 WHRNQ9P202 907 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 BTBD7Q9P203 1132 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 CNTNAP2Q9UHC6 1331 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 ZNF148Q9UQR1 794 aa11.12□□□□□ -0.63
TOP3A-209ENST00000580095 MAFBQ9Y5Q3 323 aaPredicted RBP11.12□□□□□ -0.63
TOP3A-209ENST00000580095 KIAA1217Q5T5P2 1943 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 C5orf60A6NFR6 353 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 B4GALT5O43286 388 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 KRT1P04264 644 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 ITIH2P19823 946 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 PTP4A2Q12974 167 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 NFX1Q12986 1120 aaKnown RBP11.11□□□□□ -0.63
TOP3A-209ENST00000580095 XRRA1Q6P2D8 792 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 VSTM1Q6UX27 236 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 DPH6Q7L8W6 267 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 YTHDF3Q7Z739 585 aaKnown RBP11.11□□□□□ -0.63
TOP3A-209ENST00000580095 RNF149Q8NC42 400 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 CCDC197Q8NCU1 140 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 UPF1Q92900 1129 aaKnown RBP eCLIP11.11□□□□□ -0.63
TOP3A-209ENST00000580095 KLRG1Q96E93 195 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 PIK3R2O00459 728 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 SPAG7O75391 227 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 TCF7P36402 384 aaPredicted RBP11.11□□□□□ -0.63
TOP3A-209ENST00000580095 ARL2P36404 184 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 NRLP54845 237 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 CLDN10P78369 228 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 GAD2Q05329 585 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 PTK6Q13882 451 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 TMEM132AQ24JP5 1023 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 SPDYCQ5MJ68 293 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 GPAT2Q6NUI2 795 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 DCUN1D2Q6PH85 259 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 TMEM192Q8IY95 271 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.11□□□□□ -0.63
TOP3A-209ENST00000580095 CCT6BQ92526 530 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 CDHR1Q96JP9 859 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 TMEM121Q9BTD3 319 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 KIF9Q9HAQ2 790 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 ADAMTS5Q9UNA0 930 aa11.11□□□□□ -0.63
TOP3A-209ENST00000580095 LRRD1A4D1F6 860 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 DKC1O60832 514 aaKnown RBP eCLIP11.1□□□□□ -0.63
TOP3A-209ENST00000580095 ZC3H11AO75152 810 aaKnown RBP eCLIP11.1□□□□□ -0.63
TOP3A-209ENST00000580095 BRAFP15056 766 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 NAMPTP43490 491 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 STAT5BP51692 787 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 CDH8P55286 799 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 BPIFB4P59827 614 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 TGFB2P61812 414 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 HSDL1Q3SXM5 330 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 WDR78Q5VTH9 848 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 NUGGCQ68CJ6 796 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 TRMT10CQ7L0Y3 403 aaKnown RBP11.1□□□□□ -0.63
TOP3A-209ENST00000580095 FEZF2Q8TBJ5 459 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 NLRP4Q96MN2 994 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 RBM15Q96T37 977 aaKnown RBP eCLIP11.1□□□□□ -0.635e-11■■■■■ 35.8
TOP3A-209ENST00000580095 CGRRF1Q99675 332 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 ZWILCHQ9H900 591 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 POLIQ9UNA4 740 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 NFASCO94856 1347 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 POC1B-GALNT4F8VUJ3 575 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 KIF3CO14782 793 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 FARP2O94887 1054 aaPredicted RBP11.1□□□□□ -0.63
TOP3A-209ENST00000580095 ARIH2O95376 493 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 KRT19P08727 400 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 CD19P15391 556 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 GBP1P32455 592 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 SLC1A1P43005 524 aa11.1□□□□□ -0.63
TOP3A-209ENST00000580095 RTP1P59025 263 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms