RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 ARID3AQ99856 593 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 PAAF1Q9BRP4 392 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 ZBED2Q9BTP6 218 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 DNAI2Q9GZS0 605 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 CISHQ9NSE2 258 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 PCDH10Q9P2E7 1040 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 DNAJB4Q9UDY4 337 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 FAN1Q9Y2M0 1017 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 INSL6Q9Y581 213 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 PCDHB4Q9Y5E5 795 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 BZW2Q9Y6E2 419 aaKnown RBP11.49□□□□□ -0.57
SS18-213ENST00000579640 CYB561D2O14569 222 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 NRP1O14786 923 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 B4GALT3O60512 393 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 KIF4AO95239 1232 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 GALTP07902 379 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 ODC1P11926 461 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 LAG3P18627 525 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 FECHP22830 423 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 PRKCIP41743 596 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 SLC11A1P49279 550 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 ALDH7A1P49419 539 aaKnown RBP11.49□□□□□ -0.57
SS18-213ENST00000579640 BPIFB4P59827 614 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 GOLGA8FQ08AF8 430 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 GOLGA8DPQ0D2H9 430 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 INCA1Q0VD86 236 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 MEA1Q16626 185 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 CD300LGQ6UXG3 332 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 C3orf58Q8NDZ4 430 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 SUSD3Q96L08 255 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 SENP8Q96LD8 212 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 RAD9AQ99638 391 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 CWH43Q9H720 699 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 SMYD3Q9H7B4 428 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 CACNG4Q9UBN1 327 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 DSEQ9UL01 958 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 M0QZQ0 153 aa11.48□□□□□ -0.57
SS18-213ENST00000579640 TADA2AO75478 443 aa11.48□□□□□ -0.57
SS18-213ENST00000579640 GFPT2O94808 682 aa11.48□□□□□ -0.57
SS18-213ENST00000579640 SERPING1P05155 500 aa11.48□□□□□ -0.57
SS18-213ENST00000579640 WEE2P0C1S8 567 aa11.48□□□□□ -0.57
SS18-213ENST00000579640 KRT5P13647 590 aa11.48□□□□□ -0.57
SS18-213ENST00000579640 DEKP35659 375 aaKnown RBP11.48□□□□□ -0.57
SS18-213ENST00000579640 USP8P40818 1118 aa11.48□□□□□ -0.57
SS18-213ENST00000579640 BCAR1P56945 870 aa11.48□□□□□ -0.57
SS18-213ENST00000579640 ELAVL2Q12926 359 aaKnown RBP11.48□□□□□ -0.57
SS18-213ENST00000579640 SOWAHAQ2M3V2 549 aa11.48□□□□□ -0.57
SS18-213ENST00000579640 TMEM270Q6UE05 265 aa11.48□□□□□ -0.57
SS18-213ENST00000579640 CYP26C1Q6V0L0 522 aa11.48□□□□□ -0.57
SS18-213ENST00000579640 TMCO2Q7Z6W1 182 aaPredicted RBP11.48□□□□□ -0.57
SS18-213ENST00000579640 UNC93AQ86WB7 457 aa11.48□□□□□ -0.57
SS18-213ENST00000579640 TMTC1Q8IUR5 882 aa11.48□□□□□ -0.57
SS18-213ENST00000579640 BAG1Q99933 345 aaPredicted RBP11.48□□□□□ -0.57
SS18-213ENST00000579640 AAASQ9NRG9 546 aa11.48□□□□□ -0.57
SS18-213ENST00000579640 ADAM28Q9UKQ2 775 aa11.48□□□□□ -0.57
SS18-213ENST00000579640 BARX2Q9UMQ3 279 aaPredicted RBP11.48□□□□□ -0.57
SS18-213ENST00000579640 PRG3Q9Y2Y8 225 aaPredicted RBP11.48□□□□□ -0.57
SS18-213ENST00000579640 CILPO75339 1184 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 CYP11A1P05108 521 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 CD58P19256 250 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 TYMPP19971 482 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 WARSP23381 471 aaKnown RBP11.47□□□□□ -0.57
SS18-213ENST00000579640 ANXA13P27216 316 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 ZNF132P52740 706 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 CDH8P55286 799 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 PTK2Q05397 1052 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 KLHL30Q0D2K2 578 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 TIGD5Q53EQ6 642 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 HS1BP3Q53T59 392 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 SPOUT1Q5T280 376 aaKnown RBP11.47□□□□□ -0.57
SS18-213ENST00000579640 WDR59Q6PJI9 974 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 IRF2BP2Q7Z5L9 587 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 METTL23Q86XA0 190 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 ADGRF2Q8IZF7 708 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 FIBCD1Q8N539 461 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 RBBP8NLQ8NC74 664 aaPredicted RBP11.47□□□□□ -0.57
SS18-213ENST00000579640 SP7Q8TDD2 431 aaPredicted RBP11.47□□□□□ -0.57
SS18-213ENST00000579640 RABGGTAQ92696 567 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 RNPC3Q96LT9 517 aaKnown RBP11.47□□□□□ -0.57
SS18-213ENST00000579640 ZNF558Q96NG5 402 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 SDCBP2Q9H190 292 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 PCDHB8Q9UN66 801 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 L1RE1Q9UN81 338 aa11.47□□□□□ -0.57
SS18-213ENST00000579640 MRPL42Q9Y6G3 142 aaKnown RBP11.47□□□□□ -0.57
SS18-213ENST00000579640 SF3B1O75533 1304 aaKnown RBP eCLIP11.47□□□□□ -0.574e-6■■■■■ 96
SS18-213ENST00000579640 SSU72P8A0A1W2PR75 194 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 SYN3O14994 580 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 CYP26A1O43174 497 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 TLL1O43897 1013 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 PAEPP09466 180 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 PNMA6AP0CW24 399 aaPredicted RBP11.46□□□□□ -0.57
SS18-213ENST00000579640 PPM1AP35813 382 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 BRCC3P46736 316 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 RAP1GAPP47736 663 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 LHX1P48742 406 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 ARID5AQ03989 594 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 E4F1Q66K89 784 aaPredicted RBP11.46□□□□□ -0.57
SS18-213ENST00000579640 KCNT2Q6UVM3 1135 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 PDCL2Q8N4E4 241 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 TRIM44Q96DX7 344 aaPredicted RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms