RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 DENND4AQ7Z401 1863 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 SPDYE4A6NLX3 237 aa20.83■□□□□ 0.93
SS18-208ENST00000577751 CYB561D2O14569 222 aa20.83■□□□□ 0.93
SS18-208ENST00000577751 MAPK13O15264 365 aa20.83■□□□□ 0.93
SS18-208ENST00000577751 TNNC2P02585 160 aa20.83■□□□□ 0.93
SS18-208ENST00000577751 WEE2P0C1S8 567 aa20.83■□□□□ 0.93
SS18-208ENST00000577751 TNNI1P19237 187 aa20.83■□□□□ 0.93
SS18-208ENST00000577751 OVOS1Q6IE37 1185 aa20.83■□□□□ 0.93
SS18-208ENST00000577751 CENPPQ6IPU0 288 aa20.83■□□□□ 0.93
SS18-208ENST00000577751 RTL10Q7L3V2 364 aa20.83■□□□□ 0.93
SS18-208ENST00000577751 TRAPPC11Q7Z392 1133 aa20.83■□□□□ 0.93
SS18-208ENST00000577751 USP37Q86T82 979 aa20.83■□□□□ 0.93
SS18-208ENST00000577751 ZNF707Q96C28 371 aaPredicted RBP20.83■□□□□ 0.93
SS18-208ENST00000577751 POMKQ9H5K3 350 aa20.83■□□□□ 0.93
SS18-208ENST00000577751 MAN1B1Q9UKM7 699 aa20.83■□□□□ 0.93
SS18-208ENST00000577751 LOC730098B7Z3J9 87 aa20.82■□□□□ 0.92
SS18-208ENST00000577751 KRT19P08727 400 aa20.82■□□□□ 0.92
SS18-208ENST00000577751 ATF2P15336 505 aa20.82■□□□□ 0.92
SS18-208ENST00000577751 NR2F2P24468 414 aa20.82■□□□□ 0.92
SS18-208ENST00000577751 HOXA9P31269 272 aa20.82■□□□□ 0.92
SS18-208ENST00000577751 UVSSAQ2YD98 709 aa20.82■□□□□ 0.92
SS18-208ENST00000577751 EDRF1Q3B7T1 1238 aa20.82■□□□□ 0.92
SS18-208ENST00000577751 TPGS2Q68CL5 300 aa20.82■□□□□ 0.92
SS18-208ENST00000577751 ADSSL1Q8N142 457 aa20.82■□□□□ 0.92
SS18-208ENST00000577751 GJD3Q8N144 294 aa20.82■□□□□ 0.92
SS18-208ENST00000577751 PRKD2Q9BZL6 878 aa20.82■□□□□ 0.92
SS18-208ENST00000577751 GDAP2Q9NXN4 497 aa20.82■□□□□ 0.92
SS18-208ENST00000577751 DSEQ9UL01 958 aa20.82■□□□□ 0.92
SS18-208ENST00000577751 TTC28Q96AY4 2481 aa20.82■□□□□ 0.92
SS18-208ENST00000577751 NCOR1O75376 2440 aa20.81■□□□□ 0.92
SS18-208ENST00000577751 OR6C75A6NL08 312 aa20.81■□□□□ 0.92
SS18-208ENST00000577751 TNFRSF10AO00220 468 aa20.81■□□□□ 0.92
SS18-208ENST00000577751 CST3P01034 146 aaPredicted RBP20.81■□□□□ 0.92
SS18-208ENST00000577751 C8AP07357 584 aa20.81■□□□□ 0.92
SS18-208ENST00000577751 HNRNPA1P09651 372 aaKnown RBP eCLIP20.81■□□□□ 0.92
SS18-208ENST00000577751 RPL13P26373 211 aaKnown RBP20.81■□□□□ 0.92
SS18-208ENST00000577751 MCCD1P59942 119 aaPredicted RBP20.81■□□□□ 0.92
SS18-208ENST00000577751 LIN9Q5TKA1 542 aa20.81■□□□□ 0.92
SS18-208ENST00000577751 CEP135Q66GS9 1140 aa20.81■□□□□ 0.92
SS18-208ENST00000577751 TMC2Q8TDI7 906 aa20.81■□□□□ 0.92
SS18-208ENST00000577751 FRMD4BQ9Y2L6 1034 aa20.81■□□□□ 0.92
SS18-208ENST00000577751 LRRIQ3A6PVS8 624 aaPredicted RBP20.8■□□□□ 0.92
SS18-208ENST00000577751 AKAP3O75969 853 aa20.8■□□□□ 0.92
SS18-208ENST00000577751 BMP6P22004 513 aa20.8■□□□□ 0.92
SS18-208ENST00000577751 AP3M2P53677 418 aa20.8■□□□□ 0.92
SS18-208ENST00000577751 ARPP19P56211 112 aa20.8■□□□□ 0.92
SS18-208ENST00000577751 ADAM9Q13443 819 aa20.8■□□□□ 0.92
SS18-208ENST00000577751 MORC3Q14149 939 aa20.8■□□□□ 0.92
SS18-208ENST00000577751 WSCD1Q658N2 575 aa20.8■□□□□ 0.92
SS18-208ENST00000577751 TCEAL8Q8IYN2 117 aa20.8■□□□□ 0.92
SS18-208ENST00000577751 HPDLQ96IR7 371 aa20.8■□□□□ 0.92
SS18-208ENST00000577751 RTP3Q9BQQ7 232 aa20.8■□□□□ 0.92
SS18-208ENST00000577751 AFF4Q9UHB7 1163 aaKnown RBP20.8■□□□□ 0.92
SS18-208ENST00000577751 MAFFQ9ULX9 164 aa20.8■□□□□ 0.92
SS18-208ENST00000577751 C4BPAP04003 597 aaKnown RBP20.79■□□□□ 0.92
SS18-208ENST00000577751 POU2F2P09086 479 aa20.79■□□□□ 0.92
SS18-208ENST00000577751 DLG4P78352 724 aa20.79■□□□□ 0.92
SS18-208ENST00000577751 BFSP1Q12934 665 aa20.79■□□□□ 0.92
SS18-208ENST00000577751 MYO1EQ12965 1108 aa20.79■□□□□ 0.92
SS18-208ENST00000577751 GPR17Q13304 367 aa20.79■□□□□ 0.92
SS18-208ENST00000577751 PPM1LQ5SGD2 360 aa20.79■□□□□ 0.92
SS18-208ENST00000577751 ISM2Q6H9L7 571 aa20.79■□□□□ 0.92
SS18-208ENST00000577751 RNF19BQ6ZMZ0 732 aa20.79■□□□□ 0.92
SS18-208ENST00000577751 CCDC149Q6ZUS6 474 aa20.79■□□□□ 0.92
SS18-208ENST00000577751 LIMS2Q7Z4I7 341 aa20.79■□□□□ 0.92
SS18-208ENST00000577751 METTL23Q86XA0 190 aa20.79■□□□□ 0.92
SS18-208ENST00000577751 OR10T2Q8NGX3 314 aa20.79■□□□□ 0.92
SS18-208ENST00000577751 SLC7A14Q8TBB6 771 aa20.79■□□□□ 0.92
SS18-208ENST00000577751 SMG7Q92540 1137 aaKnown RBP20.79■□□□□ 0.92
SS18-208ENST00000577751 WDR6Q9NNW5 1121 aaKnown RBP20.79■□□□□ 0.92
SS18-208ENST00000577751 LMBRD1Q9NUN5 540 aa20.79■□□□□ 0.92
SS18-208ENST00000577751 L1RE1Q9UN81 338 aa20.79■□□□□ 0.92
SS18-208ENST00000577751 R3HCC1Q9Y3T6 440 aaKnown RBP20.79■□□□□ 0.92
SS18-208ENST00000577751 IKBKBO14920 756 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 HUS1O60921 280 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 SEC24AO95486 1093 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 VNN2O95498 520 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 OR4Q2P0C623 313 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 CPB1P15086 417 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 CD44P16070 742 aaKnown RBP20.78■□□□□ 0.92
SS18-208ENST00000577751 PSMC2P35998 433 aaKnown RBP20.78■□□□□ 0.92
SS18-208ENST00000577751 PPP1R2P41236 205 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 PMS1P54277 932 aaKnown RBP20.78■□□□□ 0.92
SS18-208ENST00000577751 ENPEPQ07075 957 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 ADCY1Q08828 1119 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 C1orf220Q5T0J3 134 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 ANKRD40Q6AI12 368 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 DPH6Q7L8W6 267 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 ZC3H3Q8IXZ2 948 aaKnown RBP20.78■□□□□ 0.92
SS18-208ENST00000577751 TMEM86AQ8N2M4 240 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 PDCL2Q8N4E4 241 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 TOP6BLQ8N6T0 577 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 SPATA18Q8TC71 538 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 DHTKD1Q96HY7 919 aaPredicted RBP20.78■□□□□ 0.92
SS18-208ENST00000577751 RPGRIP1Q96KN7 1286 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 TMEM209Q96SK2 561 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 KIAA1468Q9P260 1216 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 USTQ9Y2C2 406 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 SNX9Q9Y5X1 595 aa20.78■□□□□ 0.92
SS18-208ENST00000577751 DOCK6Q96HP0 2047 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms