RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ZBTB8OSQ8IWT0 167 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 RNF149Q8NC42 400 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 MDM1Q8TC05 714 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 FGD4Q96M96 766 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 OSBPL8Q9BZF1 889 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 ROPN1BQ9BZX4 212 aaPredicted RBP10.7□□□□□ -0.7
VPS53-220ENST00000576149 ASCC2Q9H1I8 757 aaPredicted RBP10.7□□□□□ -0.7
VPS53-220ENST00000576149 ADAM7Q9H2U9 754 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 CDC42EP4Q9H3Q1 356 aaKnown RBP10.7□□□□□ -0.7
VPS53-220ENST00000576149 ROPN1Q9HAT0 212 aaPredicted RBP10.7□□□□□ -0.7
VPS53-220ENST00000576149 IP6K2Q9UHH9 426 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 RPS6KL1Q9Y6S9 549 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 RASGRF2O14827 1237 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 GJB6O95452 261 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 LSM8O95777 96 aaKnown RBP10.69□□□□□ -0.7
VPS53-220ENST00000576149 SLC25A27O95847 323 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 RPL7AP62424 266 aaKnown RBP10.69□□□□□ -0.7
VPS53-220ENST00000576149 CAV1Q03135 178 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 R3HDM1Q15032 1099 aaKnown RBP10.69□□□□□ -0.7
VPS53-220ENST00000576149 SURF1Q15526 300 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 SGSM1Q2NKQ1 1148 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 ERMARDQ5T6L9 678 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 MFSD5Q6N075 450 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 TRIM50Q86XT4 487 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 LRRC71Q8N4P6 559 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 UHMK1Q8TAS1 419 aaKnown RBP10.69□□□□□ -0.7
VPS53-220ENST00000576149 EPS8L3Q8TE67 593 aaKnown RBP10.69□□□□□ -0.7
VPS53-220ENST00000576149 XPO6Q96QU8 1125 aaKnown RBP10.69□□□□□ -0.7
VPS53-220ENST00000576149 MPHOSPH6Q99547 160 aaKnown RBP10.69□□□□□ -0.7
VPS53-220ENST00000576149 NIF3L1Q9GZT8 377 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 C2orf40Q9H1Z8 148 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 USTQ9Y2C2 406 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 POLR2AP24928 1970 aaKnown RBP10.69□□□□□ -0.7
VPS53-220ENST00000576149 PAPPA2Q9BXP8 1791 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 LRRC37A2A6NM11 1700 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 TCRBV5S1A1TA0A578 114 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 C5orf60A6NFR6 353 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 TMEM191CA6NGB0 347 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 SMIM23A6NLE4 172 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 ADM5C9JUS6 153 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 CPP00450 1065 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 CALB1P05937 261 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 PGK2P07205 417 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 TMEM191BP0C7N4 346 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 ATF2P15336 505 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 PROZP22891 400 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 CHKAP35790 457 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 ITGA8P53708 1063 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 AUHQ13825 339 aaKnown RBP10.69□□□□□ -0.7
VPS53-220ENST00000576149 PLCB4Q15147 1175 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 TRIP13Q15645 432 aaPredicted RBP10.69□□□□□ -0.7
VPS53-220ENST00000576149 C6orf89Q6UWU4 347 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 ANKS1BQ7Z6G8 1248 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 FAM212AQ96EL1 285 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 CCDC114Q96M63 670 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 STMN4Q9H169 189 aaPredicted RBP10.69□□□□□ -0.7
VPS53-220ENST00000576149 ELP3Q9H9T3 547 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 PTPRHQ9HD43 1115 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 CISHQ9NSE2 258 aa10.69□□□□□ -0.7
VPS53-220ENST00000576149 NOP56O00567 594 aaKnown RBP10.68□□□□□ -0.7
VPS53-220ENST00000576149 CXCL11O14625 94 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 KIAA0754O94854 1291 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 HOXC6P09630 235 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 CHN1P15882 459 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 CD58P19256 250 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 ADCY8P40145 1251 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 SLCO1A2P46721 670 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 IREB2P48200 963 aaKnown RBP10.68□□□□□ -0.7
VPS53-220ENST00000576149 FOXD4Q12950 439 aaPredicted RBP10.68□□□□□ -0.7
VPS53-220ENST00000576149 QPCTQ16769 361 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 SMYD5Q6GMV2 418 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 MPZL3Q6UWV2 235 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 ARMC9Q7Z3E5 817 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 EGFL6Q8IUX8 553 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 SULF1Q8IWU6 871 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 OTUD6BQ8N6M0 293 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 DCPSQ96C86 337 aaKnown RBP10.68□□□□□ -0.7
VPS53-220ENST00000576149 OTUD5Q96G74 571 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 SCLT1Q96NL6 688 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 DDX23Q9BUQ8 820 aaKnown RBP10.68□□□□□ -0.7
VPS53-220ENST00000576149 ZNF518BQ9C0D4 1074 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 ADARB2Q9NS39 739 aaKnown RBP10.68□□□□□ -0.7
VPS53-220ENST00000576149 DDX20Q9UHI6 824 aaKnown RBP10.68□□□□□ -0.7
VPS53-220ENST00000576149 DNAJC25-GNG10A0A024R161 153 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 UNCXA6NJT0 531 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 ACKR2O00590 384 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 DDNO94850 711 aaPredicted RBP10.68□□□□□ -0.7
VPS53-220ENST00000576149 CDH5P33151 784 aaPredicted RBP10.68□□□□□ -0.7
VPS53-220ENST00000576149 NF2P35240 595 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 CETN2P41208 172 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 SSR1P43307 286 aaKnown RBP10.68□□□□□ -0.7
VPS53-220ENST00000576149 LIG3P49916 1009 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 ZNF252P-AS1Q0IIN9 211 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 NFX1Q12986 1120 aaKnown RBP10.68□□□□□ -0.7
VPS53-220ENST00000576149 TRPC3Q13507 836 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 LRRC38Q5VT99 294 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 ERO1BQ86YB8 467 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 RHPN2Q8IUC4 686 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 RCOR2Q8IZ40 523 aa10.68□□□□□ -0.7
VPS53-220ENST00000576149 CCDC89Q8N998 374 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms