RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 FAM13CQ8NE31 585 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 ANKK1Q8NFD2 765 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 RNF217Q8TC41 542 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 ANKS1AQ92625 1134 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 ERCC4Q92889 916 aaPredicted RBP7.51□□□□□ -1.21
VPS53-217ENST00000575100 TRIM11Q96F44 468 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 TRIM47Q96LD4 638 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 PRO3102Q9H379 93 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 SH2B1Q9NRF2 756 aaPredicted RBP7.51□□□□□ -1.21
VPS53-217ENST00000575100 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.51□□□□□ -1.21
VPS53-217ENST00000575100 COMMD8Q9NX08 183 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 TBC1D29Q9UFV1 150 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 C19orf53Q9UNZ5 99 aaPredicted RBP7.51□□□□□ -1.21
VPS53-217ENST00000575100 MYH8P13535 1937 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 LOC285556D6RIA3 1793 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 GOLGA8AA7E2F4 631 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 PDHXO00330 501 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 PLEKHA8P1O95397 391 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 ALDH2P05091 517 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 THP07101 528 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 ADRB2P07550 413 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 GJB1P08034 283 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 BCRP11274 1271 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 EEF2P13639 858 aaKnown RBP7.5□□□□□ -1.21
VPS53-217ENST00000575100 FDPSP14324 419 aaKnown RBP7.5□□□□□ -1.21
VPS53-217ENST00000575100 PDCP20941 246 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 GJB2P29033 226 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 PSMC4P43686 418 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 TNNT3P45378 269 aaPredicted RBP7.5□□□□□ -1.21
VPS53-217ENST00000575100 METAP2P50579 478 aaKnown RBP eCLIP7.5□□□□□ -1.21
VPS53-217ENST00000575100 PDE6CP51160 858 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 GUCY1A3Q02108 690 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 RAB3GAP1Q15042 981 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 FAM110CQ1W6H9 321 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 SLC35G1Q2M3R5 365 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 ABRAXAS1Q6UWZ7 409 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 GALNT15Q8N3T1 639 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 EFHBQ8N7U6 833 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 OR10H5Q8NGA6 315 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 STON2Q8WXE9 905 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 HTRA1Q92743 480 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 RRP36Q96EU6 259 aaKnown RBP7.5□□□□□ -1.21
VPS53-217ENST00000575100 INTS4Q96HW7 963 aaKnown RBP7.5□□□□□ -1.21
VPS53-217ENST00000575100 ZC3H10Q96K80 434 aaKnown RBP7.5□□□□□ -1.21
VPS53-217ENST00000575100 GPATCH1Q9BRR8 931 aaKnown RBP7.5□□□□□ -1.21
VPS53-217ENST00000575100 CPVLQ9H3G5 476 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 CLIP2Q9UDT6 1046 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 KLHL3Q9UH77 587 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 CPA4Q9UI42 421 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 PCDHA8Q9Y5H6 950 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 MYPNQ86TC9 1320 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 ATAD5Q96QE3 1844 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 CHURC1-FNTBB4DL54 471 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 ARVCFO00192 962 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 CXCL11O14625 94 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 SOAT2O75908 522 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 SGPL1O95470 568 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 CKMP06732 381 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 GOLGA8HP0CJ92 632 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 MYF5P13349 255 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 HTR1BP28222 390 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 GRK4P32298 578 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 HOXD13P35453 343 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 CD86P42081 329 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 HSPA7P48741 367 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 ZACNQ401N2 412 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 KIAA1755Q5JYT7 1200 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 SLC35F1Q5T1Q4 408 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 GPAT2Q6NUI2 795 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 RPUSD3Q6P087 351 aaKnown RBP7.5□□□□□ -1.21
VPS53-217ENST00000575100 CPOQ8IVL8 374 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 FANCBQ8NB91 859 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 TMEM145Q8NBT3 493 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 SMARCC2Q8TAQ2 1214 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 ACER1Q8TDN7 264 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 RFFLQ8WZ73 363 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 HERVK_113Q902F9 699 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 CCDC17Q96LX7 622 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 PARK7Q99497 189 aaKnown RBP7.5□□□□□ -1.21
VPS53-217ENST00000575100 GJB4Q9NTQ9 266 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 OXSMQ9NWU1 459 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 ORC3Q9UBD5 711 aaPredicted RBP7.5□□□□□ -1.21
VPS53-217ENST00000575100 ITGB1BP2Q9UKP3 347 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 COQ6Q9Y2Z9 468 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 ZDHHC9Q9Y397 364 aa7.5□□□□□ -1.21
VPS53-217ENST00000575100 NID2Q14112 1375 aa7.49□□□□□ -1.21
VPS53-217ENST00000575100 DOCK3Q8IZD9 2030 aa7.49□□□□□ -1.21
VPS53-217ENST00000575100 PTPDC1A2A3K4 754 aa7.49□□□□□ -1.21
VPS53-217ENST00000575100 PI4K2BG5E9Z4 385 aa7.49□□□□□ -1.21
VPS53-217ENST00000575100 NOP56O00567 594 aaKnown RBP7.49□□□□□ -1.21
VPS53-217ENST00000575100 ACKR2O00590 384 aa7.49□□□□□ -1.21
VPS53-217ENST00000575100 ECEL1O95672 775 aa7.49□□□□□ -1.21
VPS53-217ENST00000575100 TTLL1O95922 423 aa7.49□□□□□ -1.21
VPS53-217ENST00000575100 HOXD8P13378 290 aaPredicted RBP7.49□□□□□ -1.21
VPS53-217ENST00000575100 CCL5P13501 91 aa7.49□□□□□ -1.21
VPS53-217ENST00000575100 ALOX12P18054 663 aa7.49□□□□□ -1.21
VPS53-217ENST00000575100 AGXTP21549 392 aa7.49□□□□□ -1.21
VPS53-217ENST00000575100 CASQ1P31415 396 aa7.49□□□□□ -1.21
VPS53-217ENST00000575100 ITGA8P53708 1063 aa7.49□□□□□ -1.21
VPS53-217ENST00000575100 SLC20A2Q08357 652 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms