RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 FNIP2Q9P278 1114 aa17.04■□□□□ 0.32
CHD3-215ENST00000572750 CDY1Q9Y6F8 540 aa17.04■□□□□ 0.32
CHD3-215ENST00000572750 DNAH14Q0VDD8 3507 aa17.03■□□□□ 0.32
CHD3-215ENST00000572750 GLUD1P00367 558 aa17.03■□□□□ 0.32
CHD3-215ENST00000572750 TRIM49P0CI25 452 aa17.03■□□□□ 0.32
CHD3-215ENST00000572750 TRIM49CP0CI26 452 aa17.03■□□□□ 0.32
CHD3-215ENST00000572750 CCNE1P24864 410 aa17.03■□□□□ 0.32
CHD3-215ENST00000572750 PPP1R2P41236 205 aa17.03■□□□□ 0.32
CHD3-215ENST00000572750 TDRD10Q5VZ19 366 aaKnown RBP17.03■□□□□ 0.32
CHD3-215ENST00000572750 RSPO2Q6UXX9 243 aaPredicted RBP17.03■□□□□ 0.32
CHD3-215ENST00000572750 TRAPPC11Q7Z392 1133 aa17.03■□□□□ 0.32
CHD3-215ENST00000572750 PPFIBP1Q86W92 1011 aa17.03■□□□□ 0.32
CHD3-215ENST00000572750 ZC3H3Q8IXZ2 948 aaKnown RBP17.03■□□□□ 0.32
CHD3-215ENST00000572750 CASP10Q92851 521 aa17.03■□□□□ 0.32
CHD3-215ENST00000572750 DHTKD1Q96HY7 919 aaPredicted RBP17.03■□□□□ 0.32
CHD3-215ENST00000572750 MSLNLQ96KJ4 702 aa17.03■□□□□ 0.32
CHD3-215ENST00000572750 APOL5Q9BWW9 433 aa17.03■□□□□ 0.32
CHD3-215ENST00000572750 MAN1C1Q9NR34 630 aa17.03■□□□□ 0.32
CHD3-215ENST00000572750 TECTAO75443 2155 aa17.03■□□□□ 0.32
CHD3-215ENST00000572750 C2orf16Q68DN1 1984 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 MTCL1Q9Y4B5 1905 aaKnown RBP17.02■□□□□ 0.32
CHD3-215ENST00000572750 KPNA7A9QM74 516 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 CETN3O15182 167 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 MAPK13O15264 365 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 TGM5O43548 720 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 MBD3O95983 291 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 SPATA31D3P0C874 917 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 PSMC2P35998 433 aaKnown RBP17.02■□□□□ 0.32
CHD3-215ENST00000572750 PNPLA4P41247 253 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 STX17P56962 302 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 RBP5P82980 135 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 YWHAHQ04917 246 aaPredicted RBP17.02■□□□□ 0.32
CHD3-215ENST00000572750 PAK1Q13153 545 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 BIRC3Q13489 604 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 C1orf220Q5T0J3 134 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 ZNF280DQ6N043 979 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 TTI2Q6NXR4 508 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 ANKRD54Q6NXT1 300 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 TMEM184AQ6ZMB5 413 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 SPATA31D4Q6ZUB0 917 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 INTS8Q75QN2 995 aaKnown RBP17.02■□□□□ 0.32
CHD3-215ENST00000572750 LRRC52Q8N7C0 313 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 APPL2Q8NEU8 664 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 CD207Q9UJ71 328 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 BACE2Q9Y5Z0 518 aa17.02■□□□□ 0.32
CHD3-215ENST00000572750 SPDYE4A6NLX3 237 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 CYB561D2O14569 222 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 EPB41P11171 864 aaKnown RBP17.01■□□□□ 0.31
CHD3-215ENST00000572750 KRT13P13646 458 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 OR1D2P34982 312 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 VAMP7P51809 220 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 ARPP19P56211 112 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 CLDN10P78369 228 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 FKBP3Q00688 224 aaKnown RBP17.01■□□□□ 0.31
CHD3-215ENST00000572750 ZP2Q05996 745 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 MRPL58Q14197 206 aaKnown RBP17.01■□□□□ 0.31
CHD3-215ENST00000572750 DPCR1Q3MIW9 517 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 CTXN3Q4LDR2 81 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 OVOS1Q6IE37 1185 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 USP37Q86T82 979 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 SMRP1Q8NCR6 262 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 FEZF2Q8TBJ5 459 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 TMC2Q8TDI7 906 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 BORCS6Q96GS4 357 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 DUSP9Q99956 384 aaKnown RBP17.01■□□□□ 0.31
CHD3-215ENST00000572750 MKNK1Q9BUB5 465 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 MMRN2Q9H8L6 949 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 DZANK1Q9NVP4 752 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 CDH22Q9UJ99 828 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 FBXL5Q9UKA1 691 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 R3HCC1Q9Y3T6 440 aaKnown RBP17.01■□□□□ 0.31
CHD3-215ENST00000572750 CACNA1HO95180 2353 aa17.01■□□□□ 0.31
CHD3-215ENST00000572750 C19orf67A6NJJ6 358 aa17■□□□□ 0.31
CHD3-215ENST00000572750 H7C4K7 107 aa17■□□□□ 0.31
CHD3-215ENST00000572750 SLC16A3O15427 465 aaKnown RBP17■□□□□ 0.31
CHD3-215ENST00000572750 TBC1D4O60343 1298 aa17■□□□□ 0.31
CHD3-215ENST00000572750 CLSTN1O94985 981 aa17■□□□□ 0.31
CHD3-215ENST00000572750 TYMPP19971 482 aa17■□□□□ 0.31
CHD3-215ENST00000572750 ROR1Q01973 937 aa17■□□□□ 0.31
CHD3-215ENST00000572750 TCF15Q12870 199 aa17■□□□□ 0.31
CHD3-215ENST00000572750 MYO1EQ12965 1108 aa17■□□□□ 0.31
CHD3-215ENST00000572750 WSCD1Q658N2 575 aa17■□□□□ 0.31
CHD3-215ENST00000572750 SYCE2Q6PIF2 218 aa17■□□□□ 0.31
CHD3-215ENST00000572750 C12orf76Q8N812 135 aaPredicted RBP17■□□□□ 0.31
CHD3-215ENST00000572750 HPDLQ96IR7 371 aa17■□□□□ 0.31
CHD3-215ENST00000572750 SNX9Q9Y5X1 595 aa17■□□□□ 0.31
CHD3-215ENST00000572750 DENND4AQ7Z401 1863 aa16.99■□□□□ 0.31
CHD3-215ENST00000572750 DMXL1Q9Y485 3027 aa16.99■□□□□ 0.31
CHD3-215ENST00000572750 BICDL2A1A5D9 508 aa16.99■□□□□ 0.31
CHD3-215ENST00000572750 WDR27A2RRH5 827 aa16.99■□□□□ 0.31
CHD3-215ENST00000572750 PHACTR2O75167 634 aa16.99■□□□□ 0.31
CHD3-215ENST00000572750 CST3P01034 146 aaPredicted RBP16.99■□□□□ 0.31
CHD3-215ENST00000572750 CYP11A1P05108 521 aa16.99■□□□□ 0.31
CHD3-215ENST00000572750 OR4Q2P0C623 313 aa16.99■□□□□ 0.31
CHD3-215ENST00000572750 PAX3P23760 479 aa16.99■□□□□ 0.31
CHD3-215ENST00000572750 GCLMP48507 274 aa16.99■□□□□ 0.31
CHD3-215ENST00000572750 MYL6P60660 151 aa16.99■□□□□ 0.31
CHD3-215ENST00000572750 PPP3CAQ08209 521 aa16.99■□□□□ 0.31
CHD3-215ENST00000572750 SMAD4Q13485 552 aaKnown RBP16.99■□□□□ 0.31
CHD3-215ENST00000572750 TRPC3Q13507 836 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms